Starting logging for fsqctools ...
Logfile: /data/scratch/projects/punim1777/subjects/fsqc/logfile.txt
Version: 2.0.0
Date: 16/10/2023 10:09:50
Command: /data/scratch/projects/punim1777/subjects/fsqc/bin/run_fsqc --subjects_dir /data/scratch/projects/punim1777/subjects/ --output_dir /data/scratch/projects/punim1777/subjects/fsqc/
Found subjects directory /data/scratch/projects/punim1777/subjects/
Found subject 630
Found subject 660
Found subject 629
Found subject 617
Found subject 659
Found subject 609
Found subject 605
Found subject 647
Found subject 643
Found subject 689
Found subject 685
Found subject 631
Found subject 677
Found subject 673
Found subject 618
Found subject 606
Found subject 686
Found subject 636
Found subject 632
Found subject 678
Found subject 674
Found subject 624
Found subject 620
Found subject 666
Found subject 662
Found subject 612
Found subject 687
Found subject 637
Found subject 633
Found subject 679
Found subject 675
Found subject 625
Found subject 621
Found subject 667
Found subject 663
Found subject 613
Found subject 655
Found subject 651
Found subject 601
Found subject 638
Found subject 626
Found subject 622
Found subject 668
Found subject 614
Found subject 610
Found subject 652
Found subject 690
Found subject 640
Found subject 682
Found subject 670
Found subject 639
Found subject 627
Found subject 665
Found subject 619
Found subject 615
Found subject 611
Found subject 657
Found subject 653
Found subject 603
Found subject 645
Found subject 641
Found subject 628
Found subject 616
Found subject 654
Found subject 608
Found subject 604
Found subject 600
Found subject 646
Found subject 642
Found subject 688
Found subject 680
Found subject 634
Found screenshot coordinates x=-10 x=10 y=0 z=0
Found screenshot orientation set to radiological
Starting fsqc for subject 630 at 2023-10-16 10:09 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 630
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 630
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002552
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 26
Topological fixing time for the left hemisphere: 24.7 min
Number of defects in the right hemisphere: 32
Topological fixing time for the right hemisphere: 29.6 min
Number of holes in the left hemisphere: 16
Number of holes in the right hemisphere: 24
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.813
WM/GM contrast SNR for the right hemisphere: 3.687
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.162, y = -0.0454, z = -0.0329 radians.
Finished subject 630 at 2023-10-16 10:09 AEDT
Starting fsqc for subject 660 at 2023-10-16 10:09 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 7.869
Gray matter signal to noise ratio: 3.394
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.36
Gray matter signal to noise ratio: 3.693
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.00248
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 42
Topological fixing time for the left hemisphere: 61.8 min
Number of defects in the right hemisphere: 34
Topological fixing time for the right hemisphere: 61.2 min
Number of holes in the left hemisphere: 36
Number of holes in the right hemisphere: 25
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.675
WM/GM contrast SNR for the right hemisphere: 3.764
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.438, y = -0.0189, z = -0.02 radians.
Finished subject 660 at 2023-10-16 10:10 AEDT
Starting fsqc for subject 629 at 2023-10-16 10:10 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.64
Gray matter signal to noise ratio: 3.458
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.31
Gray matter signal to noise ratio: 3.745
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.003032
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 51
Topological fixing time for the left hemisphere: 5.7 min
Number of defects in the right hemisphere: 42
Topological fixing time for the right hemisphere: 5.4 min
Number of holes in the left hemisphere: 21
Number of holes in the right hemisphere: 24
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.527
WM/GM contrast SNR for the right hemisphere: 3.586
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.214, y = -0.0338, z = 0.0335 radians.
Finished subject 629 at 2023-10-16 10:10 AEDT
Starting fsqc for subject 617 at 2023-10-16 10:10 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.495
Gray matter signal to noise ratio: 3.331
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.96
Gray matter signal to noise ratio: 3.791
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002393
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 35
Topological fixing time for the left hemisphere: 38.8 min
Number of defects in the right hemisphere: 27
Topological fixing time for the right hemisphere: 29.8 min
Number of holes in the left hemisphere: 17
Number of holes in the right hemisphere: 33
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.558
WM/GM contrast SNR for the right hemisphere: 3.857
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.323, y = -0.0286, z = 0.0518 radians.
Finished subject 617 at 2023-10-16 10:10 AEDT
Starting fsqc for subject 659 at 2023-10-16 10:10 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 659
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 659
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002893
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 24
Topological fixing time for the left hemisphere: 26.6 min
Number of defects in the right hemisphere: 26
Topological fixing time for the right hemisphere: 24.3 min
Number of holes in the left hemisphere: 17
Number of holes in the right hemisphere: 15
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.787
WM/GM contrast SNR for the right hemisphere: 3.625
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.127, y = -0.0599, z = -0.0258 radians.
Finished subject 659 at 2023-10-16 10:10 AEDT
Starting fsqc for subject 609 at 2023-10-16 10:10 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 609
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 609
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.003458
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 36
Topological fixing time for the left hemisphere: 8.5 min
Number of defects in the right hemisphere: 34
Topological fixing time for the right hemisphere: 8.8 min
Number of holes in the left hemisphere: 16
Number of holes in the right hemisphere: 40
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.781
WM/GM contrast SNR for the right hemisphere: 3.553
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.05, y = -0.00396, z = 0.0664 radians.
Finished subject 609 at 2023-10-16 10:10 AEDT
Starting fsqc for subject 605 at 2023-10-16 10:10 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.087
ERROR: SNR computation failed for 605
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 9.894
ERROR: SNR computation failed for 605
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002238
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 33
Topological fixing time for the left hemisphere: 23.3 min
Number of defects in the right hemisphere: 34
Topological fixing time for the right hemisphere: 29.8 min
Number of holes in the left hemisphere: 24
Number of holes in the right hemisphere: 31
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.341
WM/GM contrast SNR for the right hemisphere: 3.239
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.294, y = 0.0635, z = 0.0187 radians.
Finished subject 605 at 2023-10-16 10:10 AEDT
Starting fsqc for subject 647 at 2023-10-16 10:10 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 647
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 647
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002412
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 33
Topological fixing time for the left hemisphere: 19.1 min
Number of defects in the right hemisphere: 16
Topological fixing time for the right hemisphere: 10.5 min
Number of holes in the left hemisphere: 29
Number of holes in the right hemisphere: 8
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.682
WM/GM contrast SNR for the right hemisphere: 3.757
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.218, y = 0.0803, z = 0.068 radians.
Finished subject 647 at 2023-10-16 10:10 AEDT
Starting fsqc for subject 643 at 2023-10-16 10:10 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 643
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 643
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.001983
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 41
Topological fixing time for the left hemisphere: 26.1 min
Number of defects in the right hemisphere: 39
Topological fixing time for the right hemisphere: 28.2 min
Number of holes in the left hemisphere: 50
Number of holes in the right hemisphere: 46
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.428
WM/GM contrast SNR for the right hemisphere: 3.259
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.167, y = 3.81e-05, z = 0.065 radians.
Finished subject 643 at 2023-10-16 10:10 AEDT
Starting fsqc for subject 689 at 2023-10-16 10:10 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 9.248
Gray matter signal to noise ratio: 3.738
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.73
Gray matter signal to noise ratio: 3.947
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.003148
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 75
Topological fixing time for the left hemisphere: 27.4 min
Number of defects in the right hemisphere: 54
Topological fixing time for the right hemisphere: 25.6 min
Number of holes in the left hemisphere: 57
Number of holes in the right hemisphere: 49
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.852
WM/GM contrast SNR for the right hemisphere: 3.639
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.199, y = 0.00819, z = 0.0 radians.
Finished subject 689 at 2023-10-16 10:10 AEDT
Starting fsqc for subject 685 at 2023-10-16 10:10 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.547
Gray matter signal to noise ratio: 3.489
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.69
Gray matter signal to noise ratio: 3.923
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002717
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 53
Topological fixing time for the left hemisphere: 7.8 min
Number of defects in the right hemisphere: 44
Topological fixing time for the right hemisphere: 7.2 min
Number of holes in the left hemisphere: 52
Number of holes in the right hemisphere: 29
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.342
WM/GM contrast SNR for the right hemisphere: 3.254
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.187, y = 0.0393, z = -0.0408 radians.
Finished subject 685 at 2023-10-16 10:10 AEDT
Starting fsqc for subject 631 at 2023-10-16 10:10 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.535
Gray matter signal to noise ratio: 3.63
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 11.36
Gray matter signal to noise ratio: 3.832
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.00265
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 24
Topological fixing time for the left hemisphere: 19.5 min
Number of defects in the right hemisphere: 34
Topological fixing time for the right hemisphere: 20.1 min
Number of holes in the left hemisphere: 24
Number of holes in the right hemisphere: 32
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.517
WM/GM contrast SNR for the right hemisphere: 3.448
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.217, y = 0.13, z = -0.00361 radians.
Finished subject 631 at 2023-10-16 10:11 AEDT
Starting fsqc for subject 677 at 2023-10-16 10:11 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 9.607
Gray matter signal to noise ratio: 3.672
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 11.24
Gray matter signal to noise ratio: 4.034
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002854
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 30
Topological fixing time for the left hemisphere: 4.9 min
Number of defects in the right hemisphere: 25
Topological fixing time for the right hemisphere: 5.3 min
Number of holes in the left hemisphere: 22
Number of holes in the right hemisphere: 49
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.736
WM/GM contrast SNR for the right hemisphere: 3.435
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.203, y = -0.0317, z = -0.0462 radians.
Finished subject 677 at 2023-10-16 10:11 AEDT
Starting fsqc for subject 673 at 2023-10-16 10:11 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.273
Gray matter signal to noise ratio: 3.784
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.55
Gray matter signal to noise ratio: 4.087
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002533
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 21
Topological fixing time for the left hemisphere: 43.7 min
Number of defects in the right hemisphere: 27
Topological fixing time for the right hemisphere: 45.8 min
Number of holes in the left hemisphere: 15
Number of holes in the right hemisphere: 25
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.668
WM/GM contrast SNR for the right hemisphere: 3.512
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.314, y = 0.0333, z = -0.0341 radians.
Finished subject 673 at 2023-10-16 10:11 AEDT
Starting fsqc for subject 618 at 2023-10-16 10:11 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 618
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 618
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002692
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 37
Topological fixing time for the left hemisphere: 34.4 min
Number of defects in the right hemisphere: 36
Topological fixing time for the right hemisphere: 26.7 min
Number of holes in the left hemisphere: 37
Number of holes in the right hemisphere: 48
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 2.721
WM/GM contrast SNR for the right hemisphere: 2.801
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.14, y = -0.00841, z = 0.00792 radians.
Finished subject 618 at 2023-10-16 10:11 AEDT
Starting fsqc for subject 606 at 2023-10-16 10:11 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.638
Gray matter signal to noise ratio: 3.476
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.68
Gray matter signal to noise ratio: 3.724
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002649
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 58
Topological fixing time for the left hemisphere: 30.8 min
Number of defects in the right hemisphere: 50
Topological fixing time for the right hemisphere: 38.3 min
Number of holes in the left hemisphere: 34
Number of holes in the right hemisphere: 39
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.676
WM/GM contrast SNR for the right hemisphere: 3.436
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.134, y = 0.105, z = -0.0383 radians.
Finished subject 606 at 2023-10-16 10:11 AEDT
Starting fsqc for subject 686 at 2023-10-16 10:11 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 9.028
ERROR: SNR computation failed for 686
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.43
ERROR: SNR computation failed for 686
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.003672
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 32
Topological fixing time for the left hemisphere: 5.0 min
Number of defects in the right hemisphere: 21
Topological fixing time for the right hemisphere: 1.9 min
Number of holes in the left hemisphere: 27
Number of holes in the right hemisphere: 13
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.726
WM/GM contrast SNR for the right hemisphere: 3.697
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.0783, y = -0.0441, z = 0.0234 radians.
Finished subject 686 at 2023-10-16 10:11 AEDT
Starting fsqc for subject 636 at 2023-10-16 10:11 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.918
ERROR: SNR computation failed for 636
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.6
ERROR: SNR computation failed for 636
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002473
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 29
Topological fixing time for the left hemisphere: 28.1 min
Number of defects in the right hemisphere: 49
Topological fixing time for the right hemisphere: 25.3 min
Number of holes in the left hemisphere: 22
Number of holes in the right hemisphere: 33
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.603
WM/GM contrast SNR for the right hemisphere: 3.421
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.172, y = 0.0795, z = 0.0496 radians.
Finished subject 636 at 2023-10-16 10:11 AEDT
Starting fsqc for subject 632 at 2023-10-16 10:11 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.724
Gray matter signal to noise ratio: 3.602
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.6
Gray matter signal to noise ratio: 3.941
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002415
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 32
Topological fixing time for the left hemisphere: 18.3 min
Number of defects in the right hemisphere: 41
Topological fixing time for the right hemisphere: 20.0 min
Number of holes in the left hemisphere: 17
Number of holes in the right hemisphere: 42
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.652
WM/GM contrast SNR for the right hemisphere: 3.747
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.352, y = -0.0167, z = 0.0275 radians.
Finished subject 632 at 2023-10-16 10:11 AEDT
Starting fsqc for subject 678 at 2023-10-16 10:11 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 678
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 678
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002349
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 25
Topological fixing time for the left hemisphere: 17.4 min
Number of defects in the right hemisphere: 32
Topological fixing time for the right hemisphere: 16.6 min
Number of holes in the left hemisphere: 12
Number of holes in the right hemisphere: 24
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.645
WM/GM contrast SNR for the right hemisphere: 3.541
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.159, y = 0.0152, z = 0.0505 radians.
Finished subject 678 at 2023-10-16 10:11 AEDT
Starting fsqc for subject 674 at 2023-10-16 10:11 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 674
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 674
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.00233
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 31
Topological fixing time for the left hemisphere: 29.4 min
Number of defects in the right hemisphere: 31
Topological fixing time for the right hemisphere: 28.3 min
Number of holes in the left hemisphere: 27
Number of holes in the right hemisphere: 24
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.843
WM/GM contrast SNR for the right hemisphere: 3.754
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.147, y = -0.0635, z = 0.0338 radians.
Finished subject 674 at 2023-10-16 10:11 AEDT
Starting fsqc for subject 624 at 2023-10-16 10:11 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 9.112
Gray matter signal to noise ratio: 3.748
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 11.21
Gray matter signal to noise ratio: 3.896
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002506
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 46
Topological fixing time for the left hemisphere: 27.7 min
Number of defects in the right hemisphere: 32
Topological fixing time for the right hemisphere: 19.0 min
Number of holes in the left hemisphere: 40
Number of holes in the right hemisphere: 19
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.562
WM/GM contrast SNR for the right hemisphere: 3.55
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.119, y = 0.0573, z = 0.0334 radians.
Finished subject 624 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 620 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 9.23
Gray matter signal to noise ratio: 3.946
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 11.43
Gray matter signal to noise ratio: 4.339
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002635
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 21
Topological fixing time for the left hemisphere: 21.7 min
Number of defects in the right hemisphere: 26
Topological fixing time for the right hemisphere: 22.5 min
Number of holes in the left hemisphere: 13
Number of holes in the right hemisphere: 26
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.698
WM/GM contrast SNR for the right hemisphere: 3.393
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.383, y = -0.00846, z = -0.0419 radians.
Finished subject 620 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 666 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 7.256
ERROR: SNR computation failed for 666
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 9.359
ERROR: SNR computation failed for 666
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.001147
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 47
Topological fixing time for the left hemisphere: 9.5 min
Number of defects in the right hemisphere: 46
Topological fixing time for the right hemisphere: 7.8 min
Number of holes in the left hemisphere: 36
Number of holes in the right hemisphere: 32
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.726
WM/GM contrast SNR for the right hemisphere: 3.673
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.285, y = -0.0132, z = -0.0514 radians.
Finished subject 666 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 662 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.615
ERROR: SNR computation failed for 662
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.16
ERROR: SNR computation failed for 662
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002267
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 29
Topological fixing time for the left hemisphere: 21.2 min
Number of defects in the right hemisphere: 27
Topological fixing time for the right hemisphere: 21.0 min
Number of holes in the left hemisphere: 29
Number of holes in the right hemisphere: 18
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.706
WM/GM contrast SNR for the right hemisphere: 3.894
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.221, y = -0.00562, z = -0.0737 radians.
Finished subject 662 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 612 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 612
Reason: index 258 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 612
Reason: index 258 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002084
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 46
Topological fixing time for the left hemisphere: 38.2 min
Number of defects in the right hemisphere: 51
Topological fixing time for the right hemisphere: 40.1 min
Number of holes in the left hemisphere: 65
Number of holes in the right hemisphere: 37
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.517
WM/GM contrast SNR for the right hemisphere: 3.588
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.274, y = 0.0376, z = -0.0429 radians.
Finished subject 612 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 687 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 687
Reason: index 259 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 687
Reason: index 259 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002356
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 24
Topological fixing time for the left hemisphere: 45.7 min
Number of defects in the right hemisphere: 31
Topological fixing time for the right hemisphere: 47.6 min
Number of holes in the left hemisphere: 12
Number of holes in the right hemisphere: 13
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.746
WM/GM contrast SNR for the right hemisphere: 3.637
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.0994, y = 0.0427, z = 0.00223 radians.
Finished subject 687 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 637 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 637
Reason: index 261 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 637
Reason: index 261 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002847
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 26
Topological fixing time for the left hemisphere: 14.0 min
Number of defects in the right hemisphere: 37
Topological fixing time for the right hemisphere: 15.2 min
Number of holes in the left hemisphere: 14
Number of holes in the right hemisphere: 20
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.729
WM/GM contrast SNR for the right hemisphere: 3.558
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.0943, y = -0.00749, z = -0.0459 radians.
Finished subject 637 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 633 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.915
Gray matter signal to noise ratio: 3.545
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 11.94
Gray matter signal to noise ratio: 4.015
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.003638
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 25
Topological fixing time for the left hemisphere: 16.9 min
Number of defects in the right hemisphere: 26
Topological fixing time for the right hemisphere: 13.6 min
Number of holes in the left hemisphere: 16
Number of holes in the right hemisphere: 15
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.689
WM/GM contrast SNR for the right hemisphere: 3.544
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.129, y = -0.0, z = 0.0 radians.
Finished subject 633 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 679 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 679
Reason: index 259 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 679
Reason: index 259 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.003126
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 30
Topological fixing time for the left hemisphere: 4.6 min
Number of defects in the right hemisphere: 23
Topological fixing time for the right hemisphere: 8.6 min
Number of holes in the left hemisphere: 18
Number of holes in the right hemisphere: 24
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.745
WM/GM contrast SNR for the right hemisphere: 3.528
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.253, y = -0.0296, z = 0.0297 radians.
Finished subject 679 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 675 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.755
Gray matter signal to noise ratio: 3.375
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.3
Gray matter signal to noise ratio: 3.643
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002132
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 38
Topological fixing time for the left hemisphere: 3.3 min
Number of defects in the right hemisphere: 31
Topological fixing time for the right hemisphere: 3.9 min
Number of holes in the left hemisphere: 29
Number of holes in the right hemisphere: 22
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.697
WM/GM contrast SNR for the right hemisphere: 3.679
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.119, y = -0.000229, z = -0.0362 radians.
Finished subject 675 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 625 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 625
Reason: index 258 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 625
Reason: index 258 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002239
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 47
Topological fixing time for the left hemisphere: 101.2 min
Number of defects in the right hemisphere: 58
Topological fixing time for the right hemisphere: 99.7 min
Number of holes in the left hemisphere: 24
Number of holes in the right hemisphere: 39
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.551
WM/GM contrast SNR for the right hemisphere: 3.456
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.0798, y = 0.0639, z = 0.00741 radians.
Finished subject 625 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 621 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 621
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 621
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.003693
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 49
Topological fixing time for the left hemisphere: 34.5 min
Number of defects in the right hemisphere: 42
Topological fixing time for the right hemisphere: 33.7 min
Number of holes in the left hemisphere: 40
Number of holes in the right hemisphere: 40
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.699
WM/GM contrast SNR for the right hemisphere: 3.77
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.121, y = 0.064, z = 0.015 radians.
Finished subject 621 at 2023-10-16 10:12 AEDT
Starting fsqc for subject 667 at 2023-10-16 10:12 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 9.515
Gray matter signal to noise ratio: 3.495
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.96
Gray matter signal to noise ratio: 3.672
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002736
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 30
Topological fixing time for the left hemisphere: 28.4 min
Number of defects in the right hemisphere: 41
Topological fixing time for the right hemisphere: 31.1 min
Number of holes in the left hemisphere: 26
Number of holes in the right hemisphere: 36
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.551
WM/GM contrast SNR for the right hemisphere: 3.458
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.113, y = -0.109, z = -0.0662 radians.
Finished subject 667 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 663 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 663
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 663
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.003127
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 34
Topological fixing time for the left hemisphere: 2.6 min
Number of defects in the right hemisphere: 42
Topological fixing time for the right hemisphere: 13.4 min
Number of holes in the left hemisphere: 30
Number of holes in the right hemisphere: 32
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.656
WM/GM contrast SNR for the right hemisphere: 3.506
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.19, y = 0.0396, z = 0.0125 radians.
Finished subject 663 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 613 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 613
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 613
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002067
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 83
Topological fixing time for the left hemisphere: 51.7 min
Number of defects in the right hemisphere: 55
Topological fixing time for the right hemisphere: 47.2 min
Number of holes in the left hemisphere: 64
Number of holes in the right hemisphere: 33
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.211
WM/GM contrast SNR for the right hemisphere: 3.308
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.458, y = 0.00159, z = 0.0404 radians.
Finished subject 613 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 655 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 655
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 655
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002995
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 40
Topological fixing time for the left hemisphere: 20.3 min
Number of defects in the right hemisphere: 26
Topological fixing time for the right hemisphere: 19.1 min
Number of holes in the left hemisphere: 25
Number of holes in the right hemisphere: 23
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.448
WM/GM contrast SNR for the right hemisphere: 3.455
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.137, y = 0.0156, z = -0.0178 radians.
Finished subject 655 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 651 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.983
ERROR: SNR computation failed for 651
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.66
ERROR: SNR computation failed for 651
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002272
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 34
Topological fixing time for the left hemisphere: 6.4 min
Number of defects in the right hemisphere: 34
Topological fixing time for the right hemisphere: 5.5 min
Number of holes in the left hemisphere: 34
Number of holes in the right hemisphere: 24
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.423
WM/GM contrast SNR for the right hemisphere: 3.411
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.229, y = 0.000588, z = -0.017 radians.
Finished subject 651 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 601 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 601
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 601
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002237
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 31
Topological fixing time for the left hemisphere: 23.6 min
Number of defects in the right hemisphere: 27
Topological fixing time for the right hemisphere: 25.9 min
Number of holes in the left hemisphere: 26
Number of holes in the right hemisphere: 17
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.662
WM/GM contrast SNR for the right hemisphere: 3.71
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.0362, y = 0.049, z = -0.00794 radians.
Finished subject 601 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 638 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 638
Reason: index 258 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 638
Reason: index 258 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.00206
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 38
Topological fixing time for the left hemisphere: 7.6 min
Number of defects in the right hemisphere: 31
Topological fixing time for the right hemisphere: 7.8 min
Number of holes in the left hemisphere: 46
Number of holes in the right hemisphere: 19
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.628
WM/GM contrast SNR for the right hemisphere: 3.643
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.298, y = 0.0781, z = 0.062 radians.
Finished subject 638 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 626 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 626
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 626
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.001026
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 57
Topological fixing time for the left hemisphere: 53.9 min
Number of defects in the right hemisphere: 53
Topological fixing time for the right hemisphere: 59.4 min
Number of holes in the left hemisphere: 67
Number of holes in the right hemisphere: 42
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.542
WM/GM contrast SNR for the right hemisphere: 3.61
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.397, y = 0.00087, z = -0.017 radians.
Finished subject 626 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 622 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 622
Reason: index 257 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 622
Reason: index 257 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.003002
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 29
Topological fixing time for the left hemisphere: 5.3 min
Number of defects in the right hemisphere: 19
Topological fixing time for the right hemisphere: 5.1 min
Number of holes in the left hemisphere: 28
Number of holes in the right hemisphere: 10
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.744
WM/GM contrast SNR for the right hemisphere: 3.844
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.178, y = 0.0484, z = -0.00702 radians.
Finished subject 622 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 668 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 668
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 668
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002478
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 34
Topological fixing time for the left hemisphere: 22.3 min
Number of defects in the right hemisphere: 26
Topological fixing time for the right hemisphere: 20.5 min
Number of holes in the left hemisphere: 29
Number of holes in the right hemisphere: 14
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.572
WM/GM contrast SNR for the right hemisphere: 3.541
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.125, y = 0.037, z = 0.2 radians.
Finished subject 668 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 614 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 10.12
Gray matter signal to noise ratio: 4.041
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 12.78
Gray matter signal to noise ratio: 4.298
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002377
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 31
Topological fixing time for the left hemisphere: 16.6 min
Number of defects in the right hemisphere: 33
Topological fixing time for the right hemisphere: 18.5 min
Number of holes in the left hemisphere: 15
Number of holes in the right hemisphere: 20
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.597
WM/GM contrast SNR for the right hemisphere: 3.544
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.0403, y = -0.0818, z = 0.0639 radians.
Finished subject 614 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 610 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.827
Gray matter signal to noise ratio: 3.39
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 11.11
Gray matter signal to noise ratio: 3.73
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002918
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 37
Topological fixing time for the left hemisphere: 5.7 min
Number of defects in the right hemisphere: 27
Topological fixing time for the right hemisphere: 5.2 min
Number of holes in the left hemisphere: 21
Number of holes in the right hemisphere: 51
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.436
WM/GM contrast SNR for the right hemisphere: 3.576
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.179, y = 0.0228, z = -0.0239 radians.
Finished subject 610 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 652 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 652
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 652
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.001931
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 23
Topological fixing time for the left hemisphere: 17.2 min
Number of defects in the right hemisphere: 20
Topological fixing time for the right hemisphere: 10.7 min
Number of holes in the left hemisphere: 23
Number of holes in the right hemisphere: 11
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.69
WM/GM contrast SNR for the right hemisphere: 3.666
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.223, y = -0.0163, z = -0.0164 radians.
Finished subject 652 at 2023-10-16 10:13 AEDT
Starting fsqc for subject 690 at 2023-10-16 10:13 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 690
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 690
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002644
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 32
Topological fixing time for the left hemisphere: 6.0 min
Number of defects in the right hemisphere: 31
Topological fixing time for the right hemisphere: 8.1 min
Number of holes in the left hemisphere: 17
Number of holes in the right hemisphere: 24
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.608
WM/GM contrast SNR for the right hemisphere: 3.66
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.302, y = 0.0134, z = 0.057 radians.
Finished subject 690 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 640 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 640
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 640
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002424
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 18
Topological fixing time for the left hemisphere: 12.9 min
Number of defects in the right hemisphere: 43
Topological fixing time for the right hemisphere: 22.6 min
Number of holes in the left hemisphere: 14
Number of holes in the right hemisphere: 34
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.739
WM/GM contrast SNR for the right hemisphere: 3.496
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.156, y = 0.04, z = 0.0344 radians.
Finished subject 640 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 682 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 682
Reason: index 258 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 682
Reason: index 258 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002539
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 50
Topological fixing time for the left hemisphere: 38.7 min
Number of defects in the right hemisphere: 48
Topological fixing time for the right hemisphere: 39.2 min
Number of holes in the left hemisphere: 35
Number of holes in the right hemisphere: 34
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.546
WM/GM contrast SNR for the right hemisphere: 3.444
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.294, y = -0.0156, z = 0.129 radians.
Finished subject 682 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 670 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 10.5
Gray matter signal to noise ratio: 3.863
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 12.4
Gray matter signal to noise ratio: 4.097
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002811
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 21
Topological fixing time for the left hemisphere: 3.9 min
Number of defects in the right hemisphere: 13
Topological fixing time for the right hemisphere: 4.1 min
Number of holes in the left hemisphere: 11
Number of holes in the right hemisphere: 8
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.653
WM/GM contrast SNR for the right hemisphere: 3.674
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.252, y = 0.0164, z = -0.0492 radians.
Finished subject 670 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 639 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 10.27
Gray matter signal to noise ratio: 3.814
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 11.69
Gray matter signal to noise ratio: 4.088
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002407
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 25
Topological fixing time for the left hemisphere: 16.5 min
Number of defects in the right hemisphere: 27
Topological fixing time for the right hemisphere: 21.2 min
Number of holes in the left hemisphere: 19
Number of holes in the right hemisphere: 32
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.789
WM/GM contrast SNR for the right hemisphere: 3.461
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.00789, y = 0.047, z = 0.0184 radians.
Finished subject 639 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 627 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 627
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 627
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.001828
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 43
Topological fixing time for the left hemisphere: 23.6 min
Number of defects in the right hemisphere: 44
Topological fixing time for the right hemisphere: 35.9 min
Number of holes in the left hemisphere: 31
Number of holes in the right hemisphere: 35
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.444
WM/GM contrast SNR for the right hemisphere: 3.451
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.226, y = -0.0639, z = 0.0404 radians.
Finished subject 627 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 665 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 9.328
Gray matter signal to noise ratio: 3.549
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 11.29
Gray matter signal to noise ratio: 3.881
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002884
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 17
Topological fixing time for the left hemisphere: 3.9 min
Number of defects in the right hemisphere: 24
Topological fixing time for the right hemisphere: 4.2 min
Number of holes in the left hemisphere: 8
Number of holes in the right hemisphere: 24
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.789
WM/GM contrast SNR for the right hemisphere: 3.694
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.129, y = 0.0297, z = 0.0223 radians.
Finished subject 665 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 619 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 619
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 619
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.00294
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 29
Topological fixing time for the left hemisphere: 17.1 min
Number of defects in the right hemisphere: 26
Topological fixing time for the right hemisphere: 22.0 min
Number of holes in the left hemisphere: 21
Number of holes in the right hemisphere: 14
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.299
WM/GM contrast SNR for the right hemisphere: 3.287
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.212, y = 0.0181, z = 0.0785 radians.
Finished subject 619 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 615 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 615
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 615
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002345
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 32
Topological fixing time for the left hemisphere: 20.9 min
Number of defects in the right hemisphere: 23
Topological fixing time for the right hemisphere: 19.7 min
Number of holes in the left hemisphere: 24
Number of holes in the right hemisphere: 23
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.655
WM/GM contrast SNR for the right hemisphere: 3.743
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.047, y = -0.031, z = -0.0383 radians.
Finished subject 615 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 611 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 9.164
Gray matter signal to noise ratio: 3.063
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.94
Gray matter signal to noise ratio: 3.456
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002582
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 26
Topological fixing time for the left hemisphere: 2.1 min
Number of defects in the right hemisphere: 18
Topological fixing time for the right hemisphere: 1.9 min
Number of holes in the left hemisphere: 13
Number of holes in the right hemisphere: 16
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.883
WM/GM contrast SNR for the right hemisphere: 3.871
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.253, y = -0.01, z = -0.0091 radians.
Finished subject 611 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 657 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 9.811
Gray matter signal to noise ratio: 3.531
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 12.08
Gray matter signal to noise ratio: 3.87
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.003046
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 24
Topological fixing time for the left hemisphere: 2.4 min
Number of defects in the right hemisphere: 26
Topological fixing time for the right hemisphere: 2.2 min
Number of holes in the left hemisphere: 23
Number of holes in the right hemisphere: 24
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.575
WM/GM contrast SNR for the right hemisphere: 3.585
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.222, y = 0.0681, z = 0.0845 radians.
Finished subject 657 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 653 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 653
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 653
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002243
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 35
Topological fixing time for the left hemisphere: 5.2 min
Number of defects in the right hemisphere: 26
Topological fixing time for the right hemisphere: 4.8 min
Number of holes in the left hemisphere: 21
Number of holes in the right hemisphere: 25
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.473
WM/GM contrast SNR for the right hemisphere: 3.519
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.282, y = 0.0728, z = 0.00995 radians.
Finished subject 653 at 2023-10-16 10:14 AEDT
Starting fsqc for subject 603 at 2023-10-16 10:14 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.92
Gray matter signal to noise ratio: 3.872
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 11.37
Gray matter signal to noise ratio: 4.201
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002473
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 34
Topological fixing time for the left hemisphere: 24.2 min
Number of defects in the right hemisphere: 29
Topological fixing time for the right hemisphere: 21.0 min
Number of holes in the left hemisphere: 17
Number of holes in the right hemisphere: 20
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.54
WM/GM contrast SNR for the right hemisphere: 3.574
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.34, y = -0.0, z = -0.00815 radians.
Finished subject 603 at 2023-10-16 10:15 AEDT
Starting fsqc for subject 645 at 2023-10-16 10:15 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.905
Gray matter signal to noise ratio: 4.137
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.77
Gray matter signal to noise ratio: 4.492
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.00221
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 101
Topological fixing time for the left hemisphere: 87.3 min
Number of defects in the right hemisphere: 93
Topological fixing time for the right hemisphere: 81.2 min
Number of holes in the left hemisphere: 61
Number of holes in the right hemisphere: 62
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 2.677
WM/GM contrast SNR for the right hemisphere: 2.758
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.2, y = 0.0304, z = 0.0433 radians.
Finished subject 645 at 2023-10-16 10:15 AEDT
Starting fsqc for subject 641 at 2023-10-16 10:15 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.019
Gray matter signal to noise ratio: 3.534
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.67
Gray matter signal to noise ratio: 4.067
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002526
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 32
Topological fixing time for the left hemisphere: 25.7 min
Number of defects in the right hemisphere: 33
Topological fixing time for the right hemisphere: 26.3 min
Number of holes in the left hemisphere: 19
Number of holes in the right hemisphere: 26
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.5
WM/GM contrast SNR for the right hemisphere: 3.517
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.205, y = 0.159, z = 0.0305 radians.
Finished subject 641 at 2023-10-16 10:15 AEDT
Starting fsqc for subject 628 at 2023-10-16 10:15 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 628
Reason: index 260 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 628
Reason: index 260 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.00232
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 44
Topological fixing time for the left hemisphere: 34.6 min
Number of defects in the right hemisphere: 41
Topological fixing time for the right hemisphere: 19.7 min
Number of holes in the left hemisphere: 34
Number of holes in the right hemisphere: 42
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.608
WM/GM contrast SNR for the right hemisphere: 3.48
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.242, y = 0.0939, z = 0.0228 radians.
Finished subject 628 at 2023-10-16 10:15 AEDT
Starting fsqc for subject 616 at 2023-10-16 10:15 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 616
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 616
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002903
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 23
Topological fixing time for the left hemisphere: 18.1 min
Number of defects in the right hemisphere: 24
Topological fixing time for the right hemisphere: 16.8 min
Number of holes in the left hemisphere: 13
Number of holes in the right hemisphere: 16
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.483
WM/GM contrast SNR for the right hemisphere: 3.36
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.13, y = 0.088, z = 0.123 radians.
Finished subject 616 at 2023-10-16 10:15 AEDT
Starting fsqc for subject 654 at 2023-10-16 10:15 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 654
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 654
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002543
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 29
Topological fixing time for the left hemisphere: 44.2 min
Number of defects in the right hemisphere: 20
Topological fixing time for the right hemisphere: 39.1 min
Number of holes in the left hemisphere: 33
Number of holes in the right hemisphere: 18
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.422
WM/GM contrast SNR for the right hemisphere: 3.294
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.172, y = -0.00831, z = 0.0655 radians.
Finished subject 654 at 2023-10-16 10:15 AEDT
Starting fsqc for subject 608 at 2023-10-16 10:15 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 7.4
ERROR: SNR computation failed for 608
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 9.49
ERROR: SNR computation failed for 608
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002421
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 32
Topological fixing time for the left hemisphere: 18.2 min
Number of defects in the right hemisphere: 43
Topological fixing time for the right hemisphere: 28.6 min
Number of holes in the left hemisphere: 17
Number of holes in the right hemisphere: 26
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.57
WM/GM contrast SNR for the right hemisphere: 3.441
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.193, y = 0.0493, z = 0.0317 radians.
Finished subject 608 at 2023-10-16 10:15 AEDT
Starting fsqc for subject 604 at 2023-10-16 10:15 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 8.229
ERROR: SNR computation failed for 604
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.89
ERROR: SNR computation failed for 604
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002339
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 27
Topological fixing time for the left hemisphere: 22.7 min
Number of defects in the right hemisphere: 23
Topological fixing time for the right hemisphere: 17.6 min
Number of holes in the left hemisphere: 22
Number of holes in the right hemisphere: 23
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.816
WM/GM contrast SNR for the right hemisphere: 3.583
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.113, y = 0.0998, z = 0.0476 radians.
Finished subject 604 at 2023-10-16 10:15 AEDT
Starting fsqc for subject 600 at 2023-10-16 10:15 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 11.27
Gray matter signal to noise ratio: 4.016
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 13.09
Gray matter signal to noise ratio: 4.278
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.00247
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 25
Topological fixing time for the left hemisphere: 17.4 min
Number of defects in the right hemisphere: 18
Topological fixing time for the right hemisphere: 21.2 min
Number of holes in the left hemisphere: 11
Number of holes in the right hemisphere: 11
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.829
WM/GM contrast SNR for the right hemisphere: 3.724
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.325, y = 0.0881, z = 0.0294 radians.
Finished subject 600 at 2023-10-16 10:15 AEDT
Starting fsqc for subject 646 at 2023-10-16 10:15 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 646
Reason: index 257 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 646
Reason: index 257 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002393
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 40
Topological fixing time for the left hemisphere: 31.0 min
Number of defects in the right hemisphere: 29
Topological fixing time for the right hemisphere: 23.1 min
Number of holes in the left hemisphere: 31
Number of holes in the right hemisphere: 15
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.559
WM/GM contrast SNR for the right hemisphere: 3.48
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.193, y = 0.0306, z = 0.0647 radians.
Finished subject 646 at 2023-10-16 10:15 AEDT
Starting fsqc for subject 642 at 2023-10-16 10:15 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 642
Reason: index 256 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 642
Reason: index 256 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002175
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 63
Topological fixing time for the left hemisphere: 48.9 min
Number of defects in the right hemisphere: 38
Topological fixing time for the right hemisphere: 41.0 min
Number of holes in the left hemisphere: 46
Number of holes in the right hemisphere: 27
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.265
WM/GM contrast SNR for the right hemisphere: 3.612
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.268, y = -0.0861, z = -0.00188 radians.
Finished subject 642 at 2023-10-16 10:15 AEDT
Starting fsqc for subject 688 at 2023-10-16 10:15 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 688
Reason: index 260 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 688
Reason: index 260 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002327
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 50
Topological fixing time for the left hemisphere: 5.8 min
Number of defects in the right hemisphere: 45
Topological fixing time for the right hemisphere: 7.4 min
Number of holes in the left hemisphere: 34
Number of holes in the right hemisphere: 37
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.275
WM/GM contrast SNR for the right hemisphere: 3.302
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.338, y = -0.0484, z = 0.0396 radians.
Finished subject 688 at 2023-10-16 10:16 AEDT
Starting fsqc for subject 680 at 2023-10-16 10:16 AEDT
Computing white and gray matter SNR for orig.mgz ...
ERROR: SNR computation failed for 680
Reason: index 264 is out of bounds for axis 2 with size 256
Computing white and gray matter SNR for norm.mgz ...
ERROR: SNR computation failed for 680
Reason: index 264 is out of bounds for axis 2 with size 256
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002699
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 28
Topological fixing time for the left hemisphere: 5.5 min
Number of defects in the right hemisphere: 39
Topological fixing time for the right hemisphere: 19.5 min
Number of holes in the left hemisphere: 26
Number of holes in the right hemisphere: 28
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.587
WM/GM contrast SNR for the right hemisphere: 3.36
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.275, y = 0.042, z = 0.0343 radians.
Finished subject 680 at 2023-10-16 10:16 AEDT
Starting fsqc for subject 634 at 2023-10-16 10:16 AEDT
Computing white and gray matter SNR for orig.mgz ...
White matter signal to noise ratio: 9.558
Gray matter signal to noise ratio: 3.696
Computing white and gray matter SNR for norm.mgz ...
White matter signal to noise ratio: 10.96
Gray matter signal to noise ratio: 4.154
Checking size of the corpus callosum ...
Relative size of the corpus callosum is 0.002223
Checking topology of the surfaces ...
Number of defects in the left hemisphere: 26
Topological fixing time for the left hemisphere: 16.1 min
Number of defects in the right hemisphere: 34
Topological fixing time for the right hemisphere: 20.6 min
Number of holes in the left hemisphere: 6
Number of holes in the right hemisphere: 18
Checking WM/GM contrast SNR ...
WM/GM contrast SNR for the left hemisphere: 3.549
WM/GM contrast SNR for the right hemisphere: 3.38
Computing Talairach rotation angles ...
Found Talairach rotation angles: x = -0.176, y = 0.0241, z = -0.0344 radians.
Finished subject 634 at 2023-10-16 10:16 AEDT