Dear Jessica,

There is no intensity image associated with the atlases, so this is not trivial.

I guess you could register your subjects to the atlas, and propagate the hard segmentations?

Cheers,

/Eugenio

-- 

Juan Eugenio Iglesias

Senior research fellow

CMIC (UCL), MGH (HMS) and CSAIL (MIT)

http://www.jeiglesias.com 

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Jessica Bourgin <jessica.bourgin@univ-smb.fr>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Wednesday, 7 August 2019 at 04:49
To: freesurfer <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Transform hippocampal/amygdala segmentation to another space

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Dear all,

I would like to use the Hippocampal Subfields and Nuclei Of Amygdala tool concomitantly with the Brainnetome Atlas for a resting-state analysis.

For this purpose, I need the hippocampal/amygdala nuclei to be in the same space as the Brainnetome.

Can you advise me on the method to use to transform the segmentation to another space ?

Thank you in advance for your help.

Best regards,

Jessica BOURGIN
Laboratoire de Psychologie et Neurocognition
CNRS UMR 5105
Université Savoie Mont Blanc (USMB)
BP 1104
73011 Chambery Cedex France