Thank you for your response. The log file is attached

Sent: Tuesday, June 13, 2017 at 2:02 AM
From: "Douglas Greve" <greve@nmr.mgh.harvard.edu>
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] difference in T1 and T2 resolution

can you send the log file?

On 6/11/17 10:08 PM, John Anderson wrote:

In the log file the error was:

ERROR: MultiRegistration::loadMovables: images have different voxel sizes.
Currently not supported, maybe first make conform?
Debug info: size(1) = 1, 1, 1 size(0) = 0.7, 0.7, 0.8

MultiRegistration::loadMovables: voxel size is different /recons/subj1/mri/orig/002.mgz.

Jon

Sent: Sunday, June 11, 2017 at 2:12 PM
From: "Matt Glasser" <matt@ma-tea.com>
To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] difference in T1 and T2 resolution

What was the error message?

Peace,

Matt.

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of John Anderson <j.anderson@publicist.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Sunday, June 11, 2017 at 9:06 AM
To: <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] difference in T1 and T2 resolution

Dear Freesurfer experts,

I have T1 and T2 images were unfortunately acquired with different resolution (i.e the voxel sizes is not the same)

T1 is 280X280X208

T2 is 270X270X200

I tried to run "recon-all" but it failed to process the data. The command that I used is :

pbsubmit -c " recon-all -subjid subj1 -T2 PATH_TO_/T2.nii.gz -qcache -T2pial -all"

How can I analyze these images? Is it a correct procedure to conform the voxels using "mri_convert". Is this procedure correct? does it hurt the anatomy of the images?

I highly appreciate your help

John

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_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.