Dear Eugenio,
Many thanks for your quick reply and clarification! We have uploaded example participants here:
Best regards,
Katharina
Von: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Im Auftrag von Iglesias Gonzalez, Juan E.
Gesendet: Montag, 26. Februar 2024 16:26
An: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Cc: Jarrett, Chelsea <chelsea.jarrett@tu-dresden.de>; Ruge, Hannes <hannes.ruge@tu-dresden.de>
Betreff: Re: [Freesurfer] Too large volumes thalamus segmentation in version 7.2
Dear Katharina,
First of all, and to avoid any confusion, the bug only affected the script to gather the volumes from different subjects (“quantifyThalamicNuclei.sh”), and not the segmentations themselves.
Would you mind sharing some images, showing how/where the LGN is oversegmented, please? It would be very helpful to better understand the problem.
Kind regards,
/Eugenio
--
Juan Eugenio Iglesias