Hi Doug.

The missing files are NOT in $FREESURFER_HOME/bin; So, I guess that's why they are not found even though the path is set up in the system PATH variable.

Suggestions?

Fidel

Are the missing files in $FREESURFER_HOME/bin and is that path in your 
system PATH variable?

On 07/26/2012 01:29 PM, Fidel Vila wrote:
> Thanks for your prompt reply, Doug.
>
> I've been checking and following the wiki instructions with regards to 
> setting up proper paths, and I could not find an obvious (to me) 
> problem there.
>
> I attach a file with things I have tried and issues I have found.
>
> Further advice will be greatly appreciate it.
>
> Many thanks,
>
> Fidel
>
>
>
>
>
> On 25-Jul-12, at 8:22 PM, Douglas Greve wrote:
>
>> did you set up your environment so that your path environment 
>> variable has all the proper paths in it? Look at the wiki for 
>> instructions.
>> doug
>>
>> On 7/25/12 7:57 PM, Fidel Vila wrote:
>>> Hi Freesurfer experts,
>>>
>>> I recently installed FS (PowerPC architecture version available on 
>>> FS website) on a Mac OS X 10.4.11 and I get the attached output 
>>> error when running recon-all.
>>>
>>> Advice on how to troubleshoot this would be appreciate.
>>>
>>> Thanks,
>>>
>>> Fidel
>>>
>>>
>>>
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>
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-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

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