Hello Doug,

 

I tried rerunning the -base creation step without any luck. It appears that this process is reliant on the removed file:  

 

ERROR: cannot find /usr/local/freesurfer/stable6/average/RB_all_2016-02-11.gca

 

-Brendan

------------------------------

Message: 21

Date: Tue, 16 Feb 2016 16:40:43 -0500

From: Douglas N Greve <greve@nmr.mgh.harvard.edu>

Subject: Re: [Freesurfer] v.6.0 Permissions Error

To: freesurfer@nmr.mgh.harvard.edu

Message-ID: <56C3975B.60401@nmr.mgh.harvard.edu>

Content-Type: text/plain; charset=windows-1252; format=flowed

 

ok, try now

 

On 02/16/2016 04:38 PM, Grafe,Brendan P. (BIDMC - Neurology) wrote:

> 

> Hello all,

> 

> I am in the middle of a FreeSurfer v.6.0 longitudinal analysis,

> running on the Martinos cluster, and I received an error today during

> the (-base) template creation step regarding a file

> that the pipeline calls upon:

> 

> GCAread(/usr/local/freesurfer/stable6/average/RB_all_2016-02-11.gca):

> could not open file

> 

> I noticed that permissions access to this file are limited at present

> to the greve group and that the file was last modified earlier today.

> I’m unfamiliar with this component’s functionality, but am assuming

> access to it is necessary for template creation. Would this simply be

> the issue?

 

-----------------------------

Brendan P. Grafe MSc

Clinical Research Assistant

Berenson-Allen Center for Noninvasive Brain Stimulation

Beth Israel Deaconess Medical Center

330 Brookline Avenue

Boston, MA 02215

Tel: 617-667-0256

Fax: 617-975-5322

 



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