Hi FreeSurfer Experts!

I try to run the hippocampus subfield reconstructions. Because I already run reconall -all on my subjects (without errors,  all necessary manual edits were done) I try to reconstruct only the hippo-subfields:

 recon-all -s my_subjects -hippo-subfields

The shell output is given below... Any ideas?

Best wishes,

Luke

Subject Stamp: freesurfer-Darwin-lion-stable-pub-v5.2.0
Current Stamp: freesurfer-Darwin-lion-stable-pub-v5.2.0
INFO: SUBJECTS_DIR is /Users/lscheef/Desktop/subjects
Actual FREESURFER_HOME /Applications/freesurfer
-rw-rw-r--  1 lscheef  staff  490363 May 14 20:08 /Users/lscheef/Desktop/subjects/p119/scripts/recon-all.log
Darwin luke 12.3.0 Darwin Kernel Version 12.3.0: Sun Jan  6 22:37:10 PST 2013; root:xnu-2050.22.13~1/RELEASE_X86_64 x86_64
#--------------------------------------------
#@# Hippocampal Subfields processing Tue May 14 20:16:08 CEST 2013
\n mkdir -p /Users/lscheef/Desktop/subjects/p119/tmp/subfieldResults
\n kvlSegmentHippocampalSubfields.sh p119 left /Users/lscheef/Desktop/subjects /Users/lscheef/Desktop/subjects/p119/tmp/subfieldResults \n
Doing left side
meshFileName: /Applications/freesurfer/data/GEMS/CurrentMeshCollection30.gz
compressionLookupTableFileName: /Applications/freesurfer/data/GEMS/compressionLookupTable_left.txt
boundingBoxFileName: /Applications/freesurfer/data/GEMS/imageDump.mgz
subjectName: p119
side: left
inputDirectory: /Users/lscheef/Desktop/subjects
outputDirectory: /Users/lscheef/Desktop/subjects/p119/tmp/subfieldResults
directory /Users/lscheef/Desktop/subjects/p119/tmp/subfieldResults/p119 already exists
directory /Users/lscheef/Desktop/subjects/p119/tmp/subfieldResults/p119/left already exists
cd /Users/lscheef/Desktop/subjects/p119/tmp/subfieldResults/p119/left
cp -f /Users/lscheef/Desktop/subjects/p119/mri/nu.mgz .
cp -f /Users/lscheef/Desktop/subjects/p119/mri/aseg.mgz .
cp -f /Users/lscheef/Desktop/subjects/p119/mri/transforms/talairach.xfm .
cp /Applications/freesurfer/data/GEMS/imageDump.mgz .
kvlApplyTransform imageDump.mgz -0.9991 -0.0328 0.0258 144.0010 -0.0330 0.9994 -0.0086 2.6560 0.0255 0.0094 0.9996 -3.1939
dyld: Library not loaded: libITKCommon.3.16.dylib
  Referenced from: /Applications/freesurfer/bin/kvlApplyTransform
  Reason: image not found
/Applications/freesurfer/bin/kvlSegmentHippocampalSubfields.sh: line 18: 89411 Trace/BPT trap: 5       kvlApplyTransform imageDump.mgz -0.9991 -0.0328 0.0258 144.0010 -0.0330 0.9994 -0.0086 2.6560 0.0255 0.0094 0.9996 -3.1939
failed to do kvlApplyTransform imageDump.mgz                               -0.9991   -0.0328    0.0258  144.0010                               -0.0330    0.9994   -0.0086    2.6560                                0.0255    0.0094    0.9996   -3.1939
Darwin luke 12.3.0 Darwin Kernel Version 12.3.0: Sun Jan  6 22:37:10 PST 2013; root:xnu-2050.22.13~1/RELEASE_X86_64 x86_64

recon-all -s p119 exited with ERRORS at Tue May 14 20:16:08 CEST 2013