mri_glmfit-sim --glmdir lh.Diseased_gender_age.glmdir --cache 1.3 pos --cwpvalthresh 0.999 --overwrite cmdline mri_glmfit --y lh.Diseased_gender_age.thickness.10B.mgh --fsgd Diseased_gender_age.fsgd dods --C CAA_male-vs-female_age_slope.mtx --C CAA_male-vs-female.mtx --C CAA-vs-Control_age_slope.mtx --C CAA-vs-Control.mtx --C Males-vs-Females_age_slope.mtx --C Males-vs-Females.mtx --surf fsaverage lh --cortex --glmdir lh.Diseased_gender_age.glmdir SURFACE: fsaverage lh log file is lh.Diseased_gender_age.glmdir/cache.mri_glmfit-sim.log cd /autofs/cluster/ichresearch/Petechial /usr/local/freesurfer/stable5_0_0/bin/mri_glmfit-sim --glmdir lh.Diseased_gender_age.glmdir --cache 1.3 pos --cwpvalthresh 0.999 --overwrite $Id: mri_glmfit-sim,v 1.24.2.7 2011/01/24 17:07:14 greve Exp $ Tue May 28 13:24:51 EDT 2013 Linux eesmith 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux pfotiad setenv SUBJECTS_DIR /cluster/ichresearch/Petechial FREESURFER_HOME /usr/local/freesurfer/stable5_0_0 Original mri_glmfit command line: cmdline mri_glmfit --y lh.Diseased_gender_age.thickness.10B.mgh --fsgd Diseased_gender_age.fsgd dods --C CAA_male-vs-female_age_slope.mtx --C CAA_male-vs-female.mtx --C CAA-vs-Control_age_slope.mtx --C CAA-vs-Control.mtx --C Males-vs-Females_age_slope.mtx --C Males-vs-Females.mtx --surf fsaverage lh --cortex --glmdir lh.Diseased_gender_age.glmdir DoSim = 0 UseCache = 1 DoPoll = 0 DoPBSubmit = 0 DoBackground = 0 DiagCluster = 0 gd2mtx = dods fwhm = 15.730974 CSD /usr/local/freesurfer/stable5_0_0/average/mult-comp-cor/fsaverage/lh/cortex/fwhm16/pos/th13/mc-z.csd mri_surfcluster --in lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/sig.mgh --csd /usr/local/freesurfer/stable5_0_0/average/mult-comp-cor/fsaverage/lh/cortex/fwhm16/pos/th13/mc-z.csd --mask lh.Diseased_gender_age.glmdir/mask.mgh --cwsig lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.cluster.mgh --vwsig lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.voxel.mgh --sum lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.cluster.summary --ocn lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.ocn.mgh --oannot lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.ocn.annot --annot aparc --csdpdf lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.pdf.dat --cwpvalthresh 0.999 --o lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.masked.mgh --surf white Creating CDFs from CSD files csd->threshsign = 1 thsign = pos, id = 1 version $Id: mri_surfcluster.c,v 1.48 2010/04/12 17:36:58 greve Exp $ hemi = lh srcid = lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/sig.mgh srcsubjid = fsaverage srcsurf = white srcframe = 0 thsign = pos thmin = 1.3 thmax = -1 fdr = -1 minarea = 0 xfmfile = talairach.xfm nth = -1 outid = lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.masked.mgh MGH ocnid = lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.ocn.mgh MGH sumfile = lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.cluster.summary subjectsdir = /cluster/ichresearch/Petechial FixMNI = 1 Found 149953 vertices in mask Found 149953 vertices in mask Found 149953 points in clabel. ------------- XFM matrix (RAS2RAS) --------------- /cluster/ichresearch/Petechial/fsaverage/mri/transforms/talairach.xfm 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; ---------------------------------------------------- Reading source surface /cluster/ichresearch/Petechial/fsaverage/surf/lh.white Done reading source surface Reading annotation /cluster/ichresearch/Petechial/fsaverage/label/lh.aparc.annot reading colortable from annotation file... colortable with 35 entries read (originally /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt) Computing metric properties Loading source values number of voxels in search space = 149953 Done loading source values (nvtxs = 163842) overall max = 1.57848 at vertex 61916 overall min = -4.74023 at vertex 74934 surface nvertices 163842 surface area 65417.097656 surface area 65416.648438 Computing voxel-wise significance CSDpvalMaxSigMap(): found 0/163842 above 0 Adjusting threshold for 1-tailed test. If the input is not a -log10(p) volume, re-run with --no-adjust. Searching for Clusters ... thmin=1.300000 (0.998970), thmax=-1.000000 (-1), thsignid=1, minarea=0.000000 Found 7 clusters Max cluster size 128.833420 INFO: fixing MNI talairach coordinates Pruning by CW P-Value 0.999 Saving thresholded output to lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.masked.mgh Saving cluster numbers to lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.ocn.mgh Saving cluster pval lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.cluster.mgh Constructing output annotation Writing annotation lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.ocn.annot mri_segstats --seg lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.ocn.mgh --exclude 0 --i /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh --avgwf lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.12375 $Id: mri_segstats.c,v 1.69.2.1 2010/07/26 16:19:29 greve Exp $ cwd cmdline mri_segstats --seg lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.ocn.mgh --exclude 0 --i /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh --avgwf lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.12375 sysname Linux hostname eesmith machine x86_64 user pfotiad Loading lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.ocn.mgh Loading /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 0 segmentations Computing spatial average of each frame Writing to lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.y.ocn.dat mri_convert lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.cluster.mgh lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.cluster.mgh --frame 0 mri_convert lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.cluster.mgh lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.cluster.mgh --frame 0 $Id: mri_convert.c,v 1.166.2.6 2010/11/24 15:19:30 nicks Exp $ reading from lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.cluster.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 0 writing to lh.Diseased_gender_age.glmdir/CAA_male-vs-female_age_slope/cache.th13.pos.sig.cluster.mgh... mri_surfcluster --in lh.Diseased_gender_age.glmdir/CAA_male-vs-female/sig.mgh --csd /usr/local/freesurfer/stable5_0_0/average/mult-comp-cor/fsaverage/lh/cortex/fwhm16/pos/th13/mc-z.csd --mask lh.Diseased_gender_age.glmdir/mask.mgh --cwsig lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.cluster.mgh --vwsig lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.voxel.mgh --sum lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.cluster.summary --ocn lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.ocn.mgh --oannot lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.ocn.annot --annot aparc --csdpdf lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.pdf.dat --cwpvalthresh 0.999 --o lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.masked.mgh --surf white Creating CDFs from CSD files csd->threshsign = 1 thsign = pos, id = 1 version $Id: mri_surfcluster.c,v 1.48 2010/04/12 17:36:58 greve Exp $ hemi = lh srcid = lh.Diseased_gender_age.glmdir/CAA_male-vs-female/sig.mgh srcsubjid = fsaverage srcsurf = white srcframe = 0 thsign = pos thmin = 1.3 thmax = -1 fdr = -1 minarea = 0 xfmfile = talairach.xfm nth = -1 outid = lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.masked.mgh MGH ocnid = lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.ocn.mgh MGH sumfile = lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.cluster.summary subjectsdir = /cluster/ichresearch/Petechial FixMNI = 1 Found 149953 vertices in mask Found 149953 vertices in mask Found 149953 points in clabel. ------------- XFM matrix (RAS2RAS) --------------- /cluster/ichresearch/Petechial/fsaverage/mri/transforms/talairach.xfm 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; ---------------------------------------------------- Reading source surface /cluster/ichresearch/Petechial/fsaverage/surf/lh.white Done reading source surface Reading annotation /cluster/ichresearch/Petechial/fsaverage/label/lh.aparc.annot reading colortable from annotation file... colortable with 35 entries read (originally /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt) Computing metric properties Loading source values number of voxels in search space = 149953 Done loading source values (nvtxs = 163842) overall max = 4.3236 at vertex 74934 overall min = -1.68738 at vertex 61916 surface nvertices 163842 surface area 65417.097656 surface area 65416.648438 Computing voxel-wise significance CSDpvalMaxSigMap(): found 3490/163842 above 0 Adjusting threshold for 1-tailed test. If the input is not a -log10(p) volume, re-run with --no-adjust. Searching for Clusters ... thmin=1.300000 (0.998970), thmax=-1.000000 (-1), thsignid=1, minarea=0.000000 Found 42 clusters Max cluster size 1370.507812 INFO: fixing MNI talairach coordinates Pruning by CW P-Value 0.999 Saving thresholded output to lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.masked.mgh Saving cluster numbers to lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.ocn.mgh Saving cluster pval lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.cluster.mgh Constructing output annotation Writing annotation lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.ocn.annot mri_segstats --seg lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.ocn.mgh --exclude 0 --i /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh --avgwf lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.12375 $Id: mri_segstats.c,v 1.69.2.1 2010/07/26 16:19:29 greve Exp $ cwd cmdline mri_segstats --seg lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.ocn.mgh --exclude 0 --i /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh --avgwf lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.12375 sysname Linux hostname eesmith machine x86_64 user pfotiad Loading lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.ocn.mgh Loading /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 12 segmentations Computing statistics for each segmentation 1 1 3301 3301 2 2 1057 1057 3 3 1162 1162 4 4 1068 1068 5 5 811 811 6 6 896 896 7 7 2275 2275 8 8 1273 1273 9 9 820 820 10 10 890 890 11 11 809 809 Reporting on 11 segmentations Computing spatial average of each frame 0 1 2 3 4 5 6 7 8 9 10 Writing to lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.y.ocn.dat mri_convert lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.cluster.mgh lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.cluster.mgh --frame 0 mri_convert lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.cluster.mgh lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.cluster.mgh --frame 0 $Id: mri_convert.c,v 1.166.2.6 2010/11/24 15:19:30 nicks Exp $ reading from lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.cluster.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 0 writing to lh.Diseased_gender_age.glmdir/CAA_male-vs-female/cache.th13.pos.sig.cluster.mgh... mri_surfcluster --in lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/sig.mgh --csd /usr/local/freesurfer/stable5_0_0/average/mult-comp-cor/fsaverage/lh/cortex/fwhm16/pos/th13/mc-z.csd --mask lh.Diseased_gender_age.glmdir/mask.mgh --cwsig lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.cluster.mgh --vwsig lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.voxel.mgh --sum lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.cluster.summary --ocn lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.ocn.mgh --oannot lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.ocn.annot --annot aparc --csdpdf lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.pdf.dat --cwpvalthresh 0.999 --o lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.masked.mgh --surf white Creating CDFs from CSD files csd->threshsign = 1 thsign = pos, id = 1 version $Id: mri_surfcluster.c,v 1.48 2010/04/12 17:36:58 greve Exp $ hemi = lh srcid = lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/sig.mgh srcsubjid = fsaverage srcsurf = white srcframe = 0 thsign = pos thmin = 1.3 thmax = -1 fdr = -1 minarea = 0 xfmfile = talairach.xfm nth = -1 outid = lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.masked.mgh MGH ocnid = lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.ocn.mgh MGH sumfile = lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.cluster.summary subjectsdir = /cluster/ichresearch/Petechial FixMNI = 1 Found 149953 vertices in mask Found 149953 vertices in mask Found 149953 points in clabel. ------------- XFM matrix (RAS2RAS) --------------- /cluster/ichresearch/Petechial/fsaverage/mri/transforms/talairach.xfm 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; ---------------------------------------------------- Reading source surface /cluster/ichresearch/Petechial/fsaverage/surf/lh.white Done reading source surface Reading annotation /cluster/ichresearch/Petechial/fsaverage/label/lh.aparc.annot reading colortable from annotation file... colortable with 35 entries read (originally /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt) Computing metric properties Loading source values number of voxels in search space = 149953 Done loading source values (nvtxs = 163842) overall max = 1.56225 at vertex 58428 overall min = -4.89723 at vertex 102849 surface nvertices 163842 surface area 65417.097656 surface area 65416.648438 Computing voxel-wise significance CSDpvalMaxSigMap(): found 0/163842 above 0 Adjusting threshold for 1-tailed test. If the input is not a -log10(p) volume, re-run with --no-adjust. Searching for Clusters ... thmin=1.300000 (0.998970), thmax=-1.000000 (-1), thsignid=1, minarea=0.000000 Found 3 clusters Max cluster size 86.296501 INFO: fixing MNI talairach coordinates Pruning by CW P-Value 0.999 Saving thresholded output to lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.masked.mgh Saving cluster numbers to lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.ocn.mgh Saving cluster pval lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.cluster.mgh Constructing output annotation Writing annotation lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.ocn.annot mri_segstats --seg lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.ocn.mgh --exclude 0 --i /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh --avgwf lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.12375 $Id: mri_segstats.c,v 1.69.2.1 2010/07/26 16:19:29 greve Exp $ cwd cmdline mri_segstats --seg lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.ocn.mgh --exclude 0 --i /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh --avgwf lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.12375 sysname Linux hostname eesmith machine x86_64 user pfotiad Loading lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.ocn.mgh Loading /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 0 segmentations Computing spatial average of each frame Writing to lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.y.ocn.dat mri_convert lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.cluster.mgh lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.cluster.mgh --frame 0 mri_convert lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.cluster.mgh lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.cluster.mgh --frame 0 $Id: mri_convert.c,v 1.166.2.6 2010/11/24 15:19:30 nicks Exp $ reading from lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.cluster.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 0 writing to lh.Diseased_gender_age.glmdir/CAA-vs-Control_age_slope/cache.th13.pos.sig.cluster.mgh... mri_surfcluster --in lh.Diseased_gender_age.glmdir/CAA-vs-Control/sig.mgh --csd /usr/local/freesurfer/stable5_0_0/average/mult-comp-cor/fsaverage/lh/cortex/fwhm16/pos/th13/mc-z.csd --mask lh.Diseased_gender_age.glmdir/mask.mgh --cwsig lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.cluster.mgh --vwsig lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.voxel.mgh --sum lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.cluster.summary --ocn lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.ocn.mgh --oannot lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.ocn.annot --annot aparc --csdpdf lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.pdf.dat --cwpvalthresh 0.999 --o lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.masked.mgh --surf white Creating CDFs from CSD files csd->threshsign = 1 thsign = pos, id = 1 version $Id: mri_surfcluster.c,v 1.48 2010/04/12 17:36:58 greve Exp $ hemi = lh srcid = lh.Diseased_gender_age.glmdir/CAA-vs-Control/sig.mgh srcsubjid = fsaverage srcsurf = white srcframe = 0 thsign = pos thmin = 1.3 thmax = -1 fdr = -1 minarea = 0 xfmfile = talairach.xfm nth = -1 outid = lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.masked.mgh MGH ocnid = lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.ocn.mgh MGH sumfile = lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.cluster.summary subjectsdir = /cluster/ichresearch/Petechial FixMNI = 1 Found 149953 vertices in mask Found 149953 vertices in mask Found 149953 points in clabel. ------------- XFM matrix (RAS2RAS) --------------- /cluster/ichresearch/Petechial/fsaverage/mri/transforms/talairach.xfm 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; ---------------------------------------------------- Reading source surface /cluster/ichresearch/Petechial/fsaverage/surf/lh.white Done reading source surface Reading annotation /cluster/ichresearch/Petechial/fsaverage/label/lh.aparc.annot reading colortable from annotation file... colortable with 35 entries read (originally /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt) Computing metric properties Loading source values number of voxels in search space = 149953 Done loading source values (nvtxs = 163842) overall max = 5.18564 at vertex 102848 overall min = -1.59861 at vertex 58428 surface nvertices 163842 surface area 65417.097656 surface area 65416.648438 Computing voxel-wise significance CSDpvalMaxSigMap(): found 2385/163842 above 0 Adjusting threshold for 1-tailed test. If the input is not a -log10(p) volume, re-run with --no-adjust. Searching for Clusters ... thmin=1.300000 (0.998970), thmax=-1.000000 (-1), thsignid=1, minarea=0.000000 Found 39 clusters Max cluster size 1294.135376 INFO: fixing MNI talairach coordinates Pruning by CW P-Value 0.999 Saving thresholded output to lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.masked.mgh Saving cluster numbers to lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.ocn.mgh Saving cluster pval lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.cluster.mgh Constructing output annotation Writing annotation lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.ocn.annot mri_segstats --seg lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.ocn.mgh --exclude 0 --i /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh --avgwf lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.12375 $Id: mri_segstats.c,v 1.69.2.1 2010/07/26 16:19:29 greve Exp $ cwd cmdline mri_segstats --seg lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.ocn.mgh --exclude 0 --i /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh --avgwf lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.12375 sysname Linux hostname eesmith machine x86_64 user pfotiad Loading lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.ocn.mgh Loading /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 8 segmentations Computing statistics for each segmentation 1 1 803 803 2 2 3140 3140 3 3 1061 1061 4 4 1303 1303 5 5 615 615 6 6 629 629 7 7 560 560 Reporting on 7 segmentations Computing spatial average of each frame 0 1 2 3 4 5 6 Writing to lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.y.ocn.dat mri_convert lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.cluster.mgh lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.cluster.mgh --frame 0 mri_convert lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.cluster.mgh lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.cluster.mgh --frame 0 $Id: mri_convert.c,v 1.166.2.6 2010/11/24 15:19:30 nicks Exp $ reading from lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.cluster.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 0 writing to lh.Diseased_gender_age.glmdir/CAA-vs-Control/cache.th13.pos.sig.cluster.mgh... mri_surfcluster --in lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/sig.mgh --csd /usr/local/freesurfer/stable5_0_0/average/mult-comp-cor/fsaverage/lh/cortex/fwhm16/pos/th13/mc-z.csd --mask lh.Diseased_gender_age.glmdir/mask.mgh --cwsig lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.cluster.mgh --vwsig lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.voxel.mgh --sum lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.cluster.summary --ocn lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.ocn.mgh --oannot lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.ocn.annot --annot aparc --csdpdf lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.pdf.dat --cwpvalthresh 0.999 --o lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.masked.mgh --surf white Creating CDFs from CSD files csd->threshsign = 1 thsign = pos, id = 1 version $Id: mri_surfcluster.c,v 1.48 2010/04/12 17:36:58 greve Exp $ hemi = lh srcid = lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/sig.mgh srcsubjid = fsaverage srcsurf = white srcframe = 0 thsign = pos thmin = 1.3 thmax = -1 fdr = -1 minarea = 0 xfmfile = talairach.xfm nth = -1 outid = lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.masked.mgh MGH ocnid = lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.ocn.mgh MGH sumfile = lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.cluster.summary subjectsdir = /cluster/ichresearch/Petechial FixMNI = 1 Found 149953 vertices in mask Found 149953 vertices in mask Found 149953 points in clabel. ------------- XFM matrix (RAS2RAS) --------------- /cluster/ichresearch/Petechial/fsaverage/mri/transforms/talairach.xfm 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; ---------------------------------------------------- Reading source surface /cluster/ichresearch/Petechial/fsaverage/surf/lh.white Done reading source surface Reading annotation /cluster/ichresearch/Petechial/fsaverage/label/lh.aparc.annot reading colortable from annotation file... colortable with 35 entries read (originally /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt) Computing metric properties Loading source values number of voxels in search space = 149953 Done loading source values (nvtxs = 163842) overall max = 1.05264 at vertex 103647 overall min = -5.55472 at vertex 7357 surface nvertices 163842 surface area 65417.097656 surface area 65416.648438 Computing voxel-wise significance CSDpvalMaxSigMap(): found 0/163842 above 0 Adjusting threshold for 1-tailed test. If the input is not a -log10(p) volume, re-run with --no-adjust. Searching for Clusters ... thmin=1.300000 (0.998970), thmax=-1.000000 (-1), thsignid=1, minarea=0.000000 Found 1 clusters Max cluster size 10.258666 INFO: fixing MNI talairach coordinates Pruning by CW P-Value 0.999 Saving thresholded output to lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.masked.mgh Saving cluster numbers to lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.ocn.mgh Saving cluster pval lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.cluster.mgh Constructing output annotation Writing annotation lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.ocn.annot mri_segstats --seg lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.ocn.mgh --exclude 0 --i /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh --avgwf lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.12375 $Id: mri_segstats.c,v 1.69.2.1 2010/07/26 16:19:29 greve Exp $ cwd cmdline mri_segstats --seg lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.ocn.mgh --exclude 0 --i /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh --avgwf lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.12375 sysname Linux hostname eesmith machine x86_64 user pfotiad Loading lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.ocn.mgh Loading /autofs/cluster/ichresearch/Petechial/lh.Diseased_gender_age.thickness.10B.mgh Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 0 segmentations Computing spatial average of each frame Writing to lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.y.ocn.dat mri_convert lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.cluster.mgh lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.cluster.mgh --frame 0 mri_convert lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.cluster.mgh lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.cluster.mgh --frame 0 $Id: mri_convert.c,v 1.166.2.6 2010/11/24 15:19:30 nicks Exp $ reading from lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.cluster.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 0 writing to lh.Diseased_gender_age.glmdir/Males-vs-Females_age_slope/cache.th13.pos.sig.cluster.mgh... mri_surfcluster --in lh.Diseased_gender_age.glmdir/Males-vs-Females/sig.mgh --csd /usr/local/freesurfer/stable5_0_0/average/mult-comp-cor/fsaverage/lh/cortex/fwhm16/pos/th13/mc-z.csd --mask lh.Diseased_gender_age.glmdir/mask.mgh --cwsig lh.Diseased_gender_age.glmdir/Males-vs-Females/cache.th13.pos.sig.cluster.mgh --vwsig lh.Diseased_gender_age.glmdir/Males-vs-Females/cache.th13.pos.sig.voxel.mgh --sum lh.Diseased_gender_age.glmdir/Males-vs-Females/cache.th13.pos.sig.cluster.summary --ocn lh.Diseased_gender_age.glmdir/Males-vs-Females/cache.th13.pos.sig.ocn.mgh --oannot lh.Diseased_gender_age.glmdir/Males-vs-Females/cache.th13.pos.sig.ocn.annot --annot aparc --csdpdf lh.Diseased_gender_age.glmdir/Males-vs-Females/cache.th13.pos.pdf.dat --cwpvalthresh 0.999 --o lh.Diseased_gender_age.glmdir/Males-vs-Females/cache.th13.pos.sig.masked.mgh --surf white Creating CDFs from CSD files csd->threshsign = 1 thsign = pos, id = 1 version $Id: mri_surfcluster.c,v 1.48 2010/04/12 17:36:58 greve Exp $ hemi = lh srcid = lh.Diseased_gender_age.glmdir/Males-vs-Females/sig.mgh srcsubjid = fsaverage srcsurf = white srcframe = 0 thsign = pos thmin = 1.3 thmax = -1 fdr = -1 minarea = 0 xfmfile = talairach.xfm nth = -1 outid = lh.Diseased_gender_age.glmdir/Males-vs-Females/cache.th13.pos.sig.masked.mgh MGH ocnid = lh.Diseased_gender_age.glmdir/Males-vs-Females/cache.th13.pos.sig.ocn.mgh MGH sumfile = lh.Diseased_gender_age.glmdir/Males-vs-Females/cache.th13.pos.sig.cluster.summary subjectsdir = /cluster/ichresearch/Petechial FixMNI = 1 Found 149953 vertices in mask Found 149953 vertices in mask Found 149953 points in clabel. ------------- XFM matrix (RAS2RAS) --------------- /cluster/ichresearch/Petechial/fsaverage/mri/transforms/talairach.xfm 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; ---------------------------------------------------- Reading source surface /cluster/ichresearch/Petechial/fsaverage/surf/lh.white Done reading source surface Reading annotation /cluster/ichresearch/Petechial/fsaverage/label/lh.aparc.annot reading colortable from annotation file... colortable with 35 entries read (originally /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt) *** glibc detected *** mri_surfcluster: malloc(): memory corruption: 0x0000000005871f20 *** *** glibc detected *** mri_surfcluster: malloc(): memory corruption: 0x0000000005871f20 ***