Sure.
I couldn't find that option neither.
What I did was to semi-automatize.
I wrote a batch file to call freeview multiple times with different parameters.
Each time freeview pops up and I save the image/video. During this time the process in the terminal waits for me.
When I shut that window the next freeview window pops up and I do the same.
Ender
On 05/31/2013 11:05 AM, Garikoitz Lerma-Usabiaga wrote:
Thanks!
I can visualize the 3D renders of interest with different colors, but from "freeview -h" I couldn't get the following: is it possible to automatize the "File > Save movie frames" option?
Thanks again!Gari
On Fri, May 31, 2013 at 4:59 PM, Juan Eugenio Iglesias <iglesias@nmr.mgh.harvard.edu> wrote:
Ender asked me to forward you this:
I had to automate freeview recently.
Freeview can be used via command line.
For options please write
freeview -h
in the console / terminal.
An example command that produces a surface and overlays a map on it:
freeview -f lh.inflated:overlay=L.mgz -cam azimuth 180
Let me know if this helps.
Cheers,
E
--
On Fri, 2013-05-31 at 08:35 -0400, Ruopeng Wang wrote:
> There is a screenshot option -ss from the command-line. Run 'freeview -h' will show you all the available options.
>
> Ruopeng
>
> On May 31, 2013, at 6:16 AM, Garikoitz Lerma-Usabiaga <garikoitz@gmail.com> wrote:
>
> > Hi list,
> > is it possible to automate Freeview automation from the command line?
> >
> > I want to automatically render 3D images of the hippocampus (I have a separate volume, based on hippo-subfields) and have an image for all subjects for quality checking.
> >
> > thanks!
> > Gari
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Juan Eugenio Iglesias, PhD
http://www.jeiglesias.com
iglesias@nmr.mgh.harvard.edu
Athinoula A. Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, Massachusetts 2129
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