Hello FreeSurfer Developers,
I am attempting to compute autorecon1 in a subject to see how it works recon-all in a stepwise as described in the tutorial.
Sorry if this is a very naive question but it is the first time I am trying to run an analysis with FreeSurfer.
After running: recon-all -subjid 001 -autorecon1 -i S_001.nii.gz
I have found that it crashes with the following warning: recon-all -s 001 exited with ERRORS at dom
I have seen that the problem comes from orig_nu.log
Does anyone have any thoughts on how to trouble-shoot this problem? I have attached the recon-all.log and the orig_nu.log in case it is of any use.
Kind regards,
Rosalia