generating the subcortical atlas:

recon-all now produces aseg.mgz (subcortical atlas) with Hi-Res data (<1mm). The -hires flag is still necessary to include with recon-all when hi-res data is input. Changes to mri_normalize, mri_em_register and mri_watershed were made to support this feature.

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Alexander Li Cohen, M.D., Ph.D.
E-mail: Alexander.Cohen2@childrens.harvard.edu (Medical/Science Email)
E-mail: alexcohen@gmail.com (Lifetime Email)

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On Tue, Jan 24, 2017 at 12:21 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

Hi Alex

cut it for what?

Bruce

On Tue, 24 Jan 2017, Alex Cohen wrote:

So what resolution would make sense to use? the release notes say <1.0mm but
would 0.9mm isovol really cut it?
-Alex

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Alexander Li Cohen, M.D., Ph.D.
E-mail: Alexander.Cohen2@childrens.harvard.edu (Medical/Science Email)
E-mail: alexcohen@gmail.com (Lifetime Email)
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