export FREESURFER_HOME=/Applications/freesurfer/7.3.2
export SUBJECTS_DIR=$FREESURFER_HOME/subjects
source $FREESURFER_HOME/SetUpFreeSurfer.sh
My data is in downloads so I navigated to Downloads and then gave
$ recon-all -s sub01 -i sub-AD003S1059S61129_0000.nii.gz -all
but I always get permission error
mkdir: /Applications/freesurfer/7.3.2/subjects/sub01: Permission denied
fs-check-version --s sub01 --o /var/folders/j3/plp0z25j1j969hgspftsz2fm0000gp/T//tmp.gqzblo
ERROR: cannot find sub01
recon-all: version check failed
fs-check-version --s sub01 --o /var/folders/j3/plp0z25j1j969hgspftsz2fm0000gp/T//tmp.gqzblo
so I did it with sudo then also I get error which I learnt that the environment changes with sudo so we shouldn't use sudo.
I tried keeping the data in the subjects folder and still the same error
Could you help me with this?
Thank you
