But it did what it was supposed to do, so you must be overwriting it later

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Trolle, Carl
Sent: Thursday, September 1, 2022 3:46 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Shift in cortical parcellation, issues with previously suggested solution

Hi,

I believe so, I ran the following commands: 

mris_register -L subject/label/?h.central_sulcus.label $FREESURFER_HOME/average/?h.destrieux.simple.2009-07-29.gcs S_central subject/surf/?h.sphere $FREESURFER_HOME/average/?h.average.curvature.filled.buckner40.tif subject/surf/?h.sphere.reg.new

 and then: mris_ca_label subject ?h subject/surf/?h.sphere.reg.new $FREESURFER_HOME/average/?h.destrieux.simple.2009-07-29.gcs subject/label/?h.aparc.a2009s.annot.new

Overlaying the new annot-file over the inflated surface with the sulci visible moved the central sulcus to the designated spot (please see attached). This however seems to have caused the S_front_inf (yellow outline) to split into two.

Kind regards,

Carl