Dear Ani,

What was the exact command you used?

Cheers,

/Eugenio

Juan Eugenio Iglesias

ERC Senior Research Fellow

Translational Imaging Group

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Anik Dar <aniqa4pm@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, 1 May 2018 at 15:39
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] question about hippocampal vols

External Email - Use Caution

Hi All,

I have run

quantifyHAsubregions.sh hippoSf <T1>-<analysisID> <output_file> <OPTIONAL_SUBJECTS_DIR>

and have the volumes for the hippocampal subfields. From which of the following segmentation files are these volumes computed from ?

lh.hippoAmygLabels-T1.v21.CA.FSvoxelSpace.mgz

lh.hippoAmygLabels-T1.v21.CA.mgz

lh.hippoAmygLabels-T1.v21.FS60.FSvoxelSpace.mgz

lh.hippoAmygLabels-T1.v21.FS60.mgz

lh.hippoAmygLabels-T1.v21.FSvoxelSpace.mgz

lh.hippoAmygLabels-T1.v21.HBT.FSvoxelSpace.mgz

lh.hippoAmygLabels-T1.v21.HBT.mgz

lh.hippoAmygLabels-T1.v21.mgz

Please let me know.

Thanks

Ani