Sorry about that, I attached the wrong error msg from while I was trying
 &quot;selxavg3-sess&quot;.  They are numbered 1-69.<br><br>Wed Jul 14 18:24:59 
EDT 2010<br>INFO (kan_ecev_207ab): RunList = 008 009 010 011 012 013 014
 015 016 017 018 019 020 021<br>ERROR: there are 33 non-null conditions 
in the<br>paradigm file. However, 69 non-null conditions were<br>specified
 when mkanalysis was run. These must be made<br>consistent in order to 
run selxavg-sess.<br><br>What is the difference between &quot;selxavg-sess&quot; 
and &quot;selxavg3-sess&quot;?  The error from &quot;selxavg3-sess&quot; says:<br><br>??? 
Error using ==&gt; svd<br>Input to SVD must not contain NaN or Inf.<br><br>Error
 in ==&gt; cond at 40<br>   s = svd(A);<br><br>Error in ==&gt; 
fast_selxavg3 at 248<br>  XCond = cond(XtX);<br><br>&gt;&gt; 
------------------------------------------<br>ERROR: fast_selxavg3() 
failed\n<br><br><br>Thank you,<br><br>Gabe<br><br><div class="gmail_quote">On Wed, Jul 14, 2010 at 6:21 PM, Douglas N Greve <span dir="ltr">&lt;<a href="mailto:greve@nmr.mgh.harvard.edu">greve@nmr.mgh.harvard.edu</a>&gt;</span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">69 conditions? Are they numbered 1-69? That output does not have the right error msg in it.<br>

<br>
Gabriel A. Tobon wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div><div></div><div class="h5">
Hello,<br>
<br>
I have event related data with 69 different conditions, and every condition does not appear in every run.  This causes selxavg-sess to throw an error.  Part of the relevant debug output is below.  Why does every condition need to appear in every run?<br>

<br>
Thank you,<br>
<br>
Gabe<br>
<br>
<br>
echo &quot;$sess &quot; | &amp; tee -a $LF<br>
echo /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab<br>
tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log<br>
/mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab<br>
date | &amp; tee -a $LF<br>
date<br>
tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log<br>
Wed Jul 14 18:10:48 EDT 2010<br>
<br>
if ( ! -d $sess ) then<br>
if ( ! -d /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab ) then<br>
<br>
set funcdir = $sess/$fsd<br>
set funcdir = /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold<br>
set anadir = $sess/$fsd/$analysisname<br>
set anadir = /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze<br>
if ( $#OutParent == 0 ) then<br>
if ( 0 == 0 ) then<br>
set anadir = $sess/$fsd/$analysisname<br>
set anadir = /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze<br>
else<br>
else<br>
echo anadir = $anadir | tee -a $LF<br>
echo anadir = /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze<br>
tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log<br>
anadir = /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze<br>
if ( -e $anadir &amp;&amp; $DoGLMFit ) then<br>
if ( -e /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze &amp;&amp; 1 ) then<br>
echo &quot;analysis $analysis alread exists for $sessbase&quot; | tee -a $LF<br>
echo analysis mc_analyze alread exists for kan_ecev_207ab<br>
tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log<br>
analysis mc_analyze alread exists for kan_ecev_207ab<br>
if ( $Skip == 0 &amp;&amp; $Overwrite == 0 &amp;&amp; ! $monly &amp;&amp; ! $perrun &amp;&amp; ! $jkrun ) then<br>
if ( 0 == 0 &amp;&amp; 0 == 0 &amp;&amp; ! 0 &amp;&amp; ! 0 &amp;&amp; ! 0 ) then<br>
echo &quot;ERROR: analysis $analysis already exists. You must &quot; | tee -a $LF<br>
echo ERROR: analysis mc_analyze already exists. You must<br>
tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log<br>
ERROR: analysis mc_analyze already exists. You must<br>
echo &quot;       specify whether to -skip or -overwrite&quot; | tee -a $LF<br>
echo        specify whether to -skip or -overwrite<br>
tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log<br>
       specify whether to -skip or -overwrite<br>
exit 1 ;<br>
exit 1<br>
<br></div></div>
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<br>
-- <br>
Douglas N. Greve, Ph.D.<br>
MGH-NMR Center<br>
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</blockquote></div><br>