External Email - Use Caution        

Hi Paul,

 

Thank you for your response. I did try running FreeSurfer inside a docker derived from Ubuntu 16.04. Now there is no license invalid error. But I’m facing another error with regard to Segmentation. Please find the below screenshot.

 

 

Thank you,

Leema

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Wighton, Paul
Sent: Wednesday, October 5, 2022 11:30 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [EXTERNAL] Re: [Freesurfer] Error while testing FS version 5.1

 

Hi Leema,

 

This is a known issue.  It has to do with the behaviour of the crypt() function provided by glibc, which has changed in more recent versions of ubuntu.  We don't have a solution for it at this time, unfortunately.

 

If you downgrade to ubuntu version 16.04 (glibc v2.23) the license mechanism should work, or you could upgrade your version of FreeSurfer.  If neither of those options are possible, you could run FreeSurfer inside a docker or singularity container derived from ubuntu 16.04.

 

-Paul

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Leema_Murali@eisai.com <Leema_Murali@eisai.com>
Sent: Wednesday, October 5, 2022 8:43 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] FW: Error while testing FS version 5.1

 

        External Email - Use Caution        

Hello FreeSurfer Developers,

 

I’m trying to use Freesurfer version 5.1 for my work. I get errors based on invalid license even though I have provided the right license within $FREESURFER_HOME/.license

 

Is there a specific way to define the license file for 5.1 version. I have been using the latest version before and I had just added the license.txt with $FREESURFER_HOME.

 

Please can anyone help me to troubleshoot this  issue.

 

Platform: Ubuntu 18.04

Freesurfer version: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0

recon-all.log: see attached

 

 

Looking forward for you reply.

 

Thank you,

Leema



[This e-mail message may contain privileged, confidential and/or proprietary information of Eisai. If you believe that it has been sent to you in error, please contact the sender immediately and delete the message including any attachments, without copying, using, or distributing any of the information contained therein. This e-mail message should not be interpreted to include a digital or electronic signature that can be used to authenticate an agreement, contract or other legal document, nor to reflect an intention to be bound to any legally-binding agreement or contract.]