It might not be a registration issue. When you look at the orig.mgz compared to the rawavg.mgz, are parts of the head cut off in orig.mgz? Can you send a pic of the head orientation?

On 3/17/2023 1:32 PM, Aaron Tanenbaum wrote:

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We acquired some data this morning where the participant's head was in an unusual orientation. The participant has cervical dystonia. I have processed data like this before and freesurfer always fails. I am assuming Freesurfer is unable to register the image. I have not even run this image through freesurfer yet. Is there a way to deal with this without altering the image?
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