From Benjamin Billot:
Yep, that’s just an out of memory issue for the GPU. He/she can use the cropping flag, or use the cpu flag.

On 4/18/2022 9:58 AM, Chen ZY wrote:

        External Email - Use Caution        

Dear FreeSurfer Developers,

 

I'm attempting to use the mri_segment_hypothalamic_subunits tool on subjects that have been analyzed with recon-all as described on the wiki page

(https://surfer.nmr.mgh.harvard.edu/fswiki/HypothalamicSubunits), but I received the following error when I run the mri_segment_hypothalamic_subunits

command (mri_segment_hypothalamic_subunits --s):

 

(tensorflow) brain@neurodebian:/usr/local/apps/freesurfer/subjects$ mri_segment_hypothalamic_subunits --s bert

using 1 thread

processing 1/1

*** Error in `/usr/local/apps/freesurfer/python/bin/python3': munmap_chunk(): invalid pointer: 0x00007fa1707b3400 ***

Aborted

 

I would be appreciated if you can help me solve this problem.

 

Thank you very much!

 

Regrads,

 

 

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