There is not an easy way to do this. If you have access to the original hammersmith data, you can run each subject through FS, copy/convert the manual labels into the conformed space for each subject, then build your own volume-based atlas. If that is something you are up for, let me know and I can give you more details.

Hi Freesurfer Developers,

 

Our group is hoping to obtain the cortical thickness, surface area, and volume for various cortical regions (as well as some subcortical volumes); however, we would like these values to be outputted with respect to the regions delineated in the Hammersmith atlas. This atlas is available for free online (http://brain-development.org/brain-atlases/adult-brain-maximum-probability-map-hammers-mith-atlas-n30r83-in-mni-space/) and I’ve included a screenshot to show you what files are included in the download. Based on this information, what is the best and/or most straight forward to move forward?

 

Thank you for your time. I look forward to hearing from you.

 

1. FreeSurfer version: freesurfer-i386-apple-darwin11.4.2-stable6-20170119
2. Platform: macOS High Sierra (Version 10.13.1)

 

Best,

 

Ryan

--

Ryan Flores

Clinical Research Coordinator

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