Hello Freesurfer,
I played around with mri_normalize for control point section by changing the parameters using -b 20 or 23 and writing it in an expert file. However, when I ran recon-all -autorecon2-cp -autorecon3 -expert expert.opts, the command showed "mri_normalize - mprage -noconform ....) see screenshot attached. Shouldn't -b 23 replace -noconform? That's "mri_normalize -mprage -b 23 " not " mri_normalize -mprage -noconform ".
Second question, if I add control points and make white matter edits, should I start recon-all at autorecon2-cp or autorecon2-wm? Thanks
Best,
Paul
Sent from my BlackBerry 10 smartphone.