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Dear all,

I am trying to understand what is going on in my subjects (same problem with 5 different ones).

the outputs from the first steps of trac-all seems to work fine, so I am running:


trac-all -prep -c config_01C.txt -nocorr -noqa -nointra -nointer -nomasks -notensor -no-isrunning
but the process gets stuck (in the log file I read something like 'WARN: Could not find satisfactory control point fit - try 20784 Finding center streamline' ) which keeps going...
The only outputs which seem to be created are for cst and Ilf, the others not.
I am also trying to include just some tract by specifying in the configuration file:

set pathlist = ( lh.slfp_PP rh.slfp_PP \
                 lh.slft_PP rh.slft_PP )

but nothing seems to change..

Can I please have some assistance here? It has been days and I cannot seem to fix it..

also, I tried to run bedpost only but I receive an erro:
trac-all -prep -c config_01C.txt -nocorr -noqa -nointra -nointer -nomasks -notensor -noprior -no-isrunning

saying that I didn't specify any steps.. isn't bedpost a preprocessing step?
also when tryingtrac-all -bedp -c config_02C.txt -no-isrunning​
nothing works... is it because the -prior steps needs to be finished?


Thanks to anyone willing to help!



Best,
Cecilia


Cecilia Mazzetti - Ph.D. Researcher
Donders Centre for Cognitive Neuroimaging, room 2.257
Kapittelweg 29 | 6525 EN Nijmegen