I'm sure they will. When you re-run it, add --debug as the first argument and capture the entire terminal output to a file (don't try to take a snapshot)

On 11/13/2020 11:50 AM, Walsh, Erin wrote:

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Not presently, as I would need to install on my personal computer. I can ask HPC IT to replace the file again and retest to see if things replicate...

Erin


From: Douglas N. Greve <dgreve@mgh.harvard.edu>
Sent: Friday, November 13, 2020 11:48 AM
To: Walsh, Erin <erin_walsh@med.unc.edu>; freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: tkregister issue with reg-feat2anat
 
Can you run it outside of the HCP?

On 11/13/2020 11:27 AM, Walsh, Erin wrote:

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From the HPC, I am running: freesurfer/7.1.0

Yes, the file is in the /bin:

[edub@longleaf-login1 dicom2nifti]$ ls $FREESURFER_HOME/bin/tkreg*

/nas/longleaf/apps/freesurfer/7.1.0/freesurfer/bin/tkregister2       /nas/longleaf/apps/freesurfer/7.1.0/freesurfer/bin/tkregisterfv

/nas/longleaf/apps/freesurfer/7.1.0/freesurfer/bin/tkregister2_cmdl


From: Douglas N. Greve <dgreve@mgh.harvard.edu>
Sent: Friday, November 13, 2020 11:21 AM
To: Walsh, Erin <erin_walsh@med.unc.edu>; freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: tkregister issue with reg-feat2anat
 
What version of FS are you running? Can you find tkregister2_cmdl in $FREESURFER_HOME/bin ?

On 11/13/2020 10:51 AM, Walsh, Erin wrote:

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