Hi all,

I'm trying to extract cortical thickness data from each lobe per participant. Here are the commands I used so far:

1) create annotation file for lobes: mri_annotation2label --subject $s --hemi lh --lobesStrict lh.lobesStrict.annot

2) extract lobe labels: mri_annotation2label --subject $s --hemi lh --annotation lobesStrict --outdir $s/label

3) create stats file for each lobe per participant: mris_anatomical_stats -a $s/label/lh.lobesStrict.annot -b -f $s/stats/lh.lobesStrict.stats

PROBLEM: I'm stuck now on how to compile all of the data into one file. I've tried:

aparcstats2table --subjects <subjectlist> --parc lobesStrict.annot --hemi lh –meas thickness --tablefile lh.lobesStrict.thickness.stats.txt

I've also tried:

asegstats2table --subjects <subjectlist> --subdir=stats --statsfile lh.lobesStrict --tablefile lh.lobesStrict.thickness.stats.txt

None of these work. Can someone please tell me what I'm doing wrong?

Thanks!
Krista