Hi,

On Feb 4, 2014, at 15:38 , Saurabh Thakur <srbhthkr@gmail.com> wrote:

>

> On Tue, Feb 4, 2014 at 7:41 PM, Sebastian Moeller <sebastian.moeller1@rwth-aachen.de> wrote:
> tkmedit subject1 rawavg.mgz
>
> Hi Sebastian,
>
> tkmedit is properly get attached.
> tat means tcsh is working properly.
> //==========================================================//
> saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ cd $SUBJECTS_DIR
> saurabh@saurabh-Dell-System-XPS-L502X:~/Desktop/saurabh_freesurfer$
>
> saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ cat `which tkmedit`
> #!/bin/tcsh -ef
> source $FREESURFER_HOME/bin/tcl_setup
> exec $FREESURFER_HOME/tktools/tkmedit.bin $argv
> saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$
>
>
> saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ tkmedit subject1 rawavg.mgz
> /usr/local/freesurfer/tktools/tkmedit.bin: Command not found.
> saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$
> //===============================================================//
>
>

> Still error is present…?

Looks like it, so let me propose:

I could imagine that somehow the invoked tcsh instance does not have the correct path available. To test this hypothesis could you save the following to your home directory as tkmedit2

        So in other words, open your preferred editor (edit?) create a new file with the name tkmedit2 in your home directory, and copy and paste the following into it and save it again:

#!/bin/tcsh -Fe
source $FREESURFER_HOME/bin/tcl_setup
echo ${PATH}
exec $FREESURFER_HOME/tktools/tkmedit.bin $argv

exit 0
#last line…



and test:
tkmedit2 subject1 rawavg.mgz
(and post the output) in my last mail there was a typo here, the goal is to call the just created tkmedit2 and see whether the $PATCH contains the tktools directory.

best regards
        Sebastian




>
>
> cheers
> Saurabh Thakur,

>
>
>
>
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