Also if I try to avoid this step I get a new error

I don't know if this adds helpful insight!

fslswapdim /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz x -y z /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz

INFO: left-right orientation was flipped by fslswapdim

fslorient -forceradiological /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz

mri_probedicom --i //media/Data/Temple/Temple_Tracula/31313422_10128/dti_dicom/31313422_10128.MR.Temple.9.1.20140806.182244.xfrp16.dcm > /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0info.dat

TE: Subscript out of range.

fslroi /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/dwi_eddy.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/lowb.nii.gz 0 1

ERROR: Unrecognized format of phase map /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz

On Sat, Dec 3, 2016 at 2:42 PM, Katherine Damme <katherine.damme@gmail.com> wrote:

Hello!

I have been getting a "set: No match." error. I haven't been able to sort out what is causing it.

Attached you will find the configuration file, command, and log files associated with this error.

"mv -f /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs.norot
xfmrot /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/dwi.ecclog /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs.norot /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs
set: No match."