On Sep 26, 2021, at 14:10, Banik, Rana <rana.banik@vanderbilt.edu> wrote:

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I installed freesurfer here: 

banikr2@banikr:~$ which freesurfer 
/usr/local/freesurfer/bin/freesurfer

I am getting the following error while running recon-all:

banikr2@banikr:~$ export SUBJECT_DIR=/home/banikr2/273_p
banikr2@banikr:~$ recon-all -s sub273 -i 273_p/273_MR.nii
mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied
mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied
mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied
cp: cannot create regular file '/usr/local/freesurfer/subjects/sub273/scripts/build-stamp.txt': No such file or directory
cat: /usr/local/freesurfer/subjects/sub273/scripts/build-stamp.txt: No such file or directory
INFO: FreeSurfer build stamps do not match
Subject Stamp: 
Current Stamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551

I found this from previous troubleshoot emails of freesurfer here: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg65221.html

which I performed accordingly. 

Any suggestions?

Rana Banik

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