setenv SUBJECTS_DIR /Volumes/fMRI/Scanner_Data/

sdout /Volumes/fMRI/Scanner_Data/

mri_convert /Volumes/fMRI/Scanner_Data//P022/output/mri/orig.mgz /Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh --apply_transform /Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm -oc 0 0 0

mri_convert /Volumes/fMRI/Scanner_Data//P022/output/mri/orig.mgz /Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh --apply_transform /Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm -oc 0 0 0 

$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $

reading from /Volumes/fMRI/Scanner_Data//P022/output/mri/orig.mgz...

TR=2200.00, TE=4.26, TI=1200.00, flip angle=9.00

i_ras = (-1, -1.16415e-10, 1.27329e-11)

j_ras = (1.0732e-10, -7.26432e-08, -1)

k_ras = (3.49246e-10, 1, -7.07805e-08)

INFO: Reading transformation from file /Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm...

Reading transform with LTAreadEx()

INFO: Applying transformation from file /Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm...

---------------------------------

INFO: Transform Matrix (linear_ras_to_ras)

 1.182   0.047  -0.032  -0.505;

-0.064   1.202   0.238   18.683;

 0.093  -0.236   1.271  -31.892;

 0.000   0.000   0.000   1.000;

INFO: Transform dst volume info is not used (valid flag = 0).

INFO: LTA dst geometry information missing!

      We assume that the dst volume passed is the

      same as the dst for the transform.

INFO: LTA src geometry information missing!

      We assume that the src volume passed is the

      same as the src for the transform.

ERROR: mri_convert failed.