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Hello,

You can follow  https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TroubleshootingDataV6.0 to correct your defects.
 
Thanks and Regards
Nayan Wadhwani


On Thu, Feb 20, 2020 at 8:04 PM Bruno Pastorello <bruno.pastorello@hc.fm.usp.br> wrote:

        External Email - Use Caution        

Dear freesurfer developers,
I have a subject that the wm surface is located where pial surface should be and pial surface is located out of the brain. I tried to use -FLAIR flag but the result is the same. Do you know what could be happening? How to fix this problem? 
thanks in advance
Bruno


Bruno Fraccini Pastorello
Físico Médico | Ressonância Magnética | LIM44 
Instituto de Radiologia do HCFMUSP
Ramal: +55 11 2661-7619
bruno.pastorello@hc.fm.usp.br

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