If you look in the recon-all.log file (or recon-all.cmd file), you will find the command that creates the wmparc.mgz. You can adapt it to use the DKT

On 2/6/2024 6:53 AM, Hamied Haroon wrote:

External Email - Use Caution

Hello Freesurfer Gurus,

Is it possible to obtain “wmparc” but for the DKT cortical atlas, please?

Many thanks.

Best wishes,

Hamied

Dr Hamied A Haroon [he/him/his], MSc, PhD, MInstP

Research Fellow in Quantitative Biomedical MR Imaging

The University of Manchester
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