I am trying to launch the LGI option, but the program seems to wait for a response, here is the complete output,. Even if I type yes it doesn’t seems to continue.

Do you know how to solve this?

Thanks in advance

Leila

[cammoun@lts1pc72 ~/freesurfer]# recon-all -lgi -sid chuv60

INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects

Actual FREESURFER_HOME /home/cammoun/freesurfer

-rwxrwxrwx 1 root root 569567 Apr 15 18:20 /usr/local/freesurfer/subjects/chuv60/scripts/recon-all.log

Linux lts1pc72.epfl.ch 2.6.20-1.2944.fc6 #1 SMP Tue Apr 10 17:46:00 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux

INFO: current FREESURFER_HOME does not match that of previous processing.

Current: /home/cammoun/freesurfer

Previous: /usr/local/freesurfer

/usr/local/freesurfer/subjects/chuv60/surf

#--------------------------------------------

#@# Local Gyrification Index lh Tue Apr 15 18:21:04 CEST 2008

mris_compute_lgi --i lh.pial

=================

rm -Rf tmp-mris_compute_lgi

=================

mkdir -p tmp-mris_compute_lgi

=================

mris_fill -c -r 1 lh.pial tmp-mris_compute_lgi/lh.pial.filled.mgz

=================

reading surface from lh.pial...

writing filled volume to tmp-mris_compute_lgi/lh.pial.filled.mgz...

conforming output volume

setting resolution for intermediate calculations to 1.0000

=================

make_outer_surface('tmp-mris_compute_lgi/lh.pial.filled.mgz',15,'tmp-mris_compute_lgi/lh.pial-outer')

=================

Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen.

< M A T L A B >

Version 7.5.0.338 (R2007b)

August 9, 2007

To get started, type one of these: helpwin, helpdesk, or demo.

For product information, visit www.mathworks.com.

>> reading filled volume...

rm: remove regular file `/tmp/tmp8147237.mgh'?