Can you compute the registration between the manually traced anat space
and the FS conformed space? Eg, with BBR. If you can do that, then you
can run mri_label2vol to convert the mask into FS conformed space
(assuming that that is what you want to do).
doug
> _______________________________________________
On 03/22/2013 04:43 PM, Joshua Lee wrote:
> Hi All,
>
> I wanted to get peoples advice on the best method of
> registration/interpolation to use on a manually traced segmentation
> (and its structural) that is not in the same space and orientation as
> the structurals I started Freesurfer with (although they both
> originally came from the same image. I want to maintain the integrity
> of the manual traced binary mask through this registration and
> reslice. For a number of reasons, I do not want to take Freesurfers
> output to the space of the manual segmentation.
>
> What do people think is a good technique? Flirt nearest neighbor
> interpolation? Something different from Freesurfer? ANTs?
> -
> Josh
>
>
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
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