Hi everybody,
I am currently trying to run mris_prepoc. However FreeSurfer keeps telling me that there are no subjects specified.
Thus, I think that the fsgd-file I created is the problem.
I already checked it several times but still don’t know what’s wrong. I would be very thankful for some tips.
-------- freesurfer-Darwin-lion-stable-pub-v5.3.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applications/freesurfer
FSFAST_HOME /Applications/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /Applications/freesurfer/subjects
MNI_DIR /Applications/freesurfer/mni
[kpsy-mac84024:~/Desktop/larissa/Gewalt] Forschung% setenv SUBJECTS_DIR /Users/Forschung/Desktop/Larissa/Gewalt/
[kpsy-mac84024:~/Desktop/larissa/Gewalt] Forschung% mris_preproc --fsgd FSGD.fsgd --cache-in thickness.fwhm10.fsaverage --target fsaverage --hemi lh --out lh.gewalt.10.mgh
ERROR: no subjects specified
[kpsy-mac84024:~/Desktop/larissa/Gewalt] Forschung%
GroupDescriptorFile 1
Title Aggression
Class Group1
Class Group2
Variables Age
Input zv75 Group1 27
Input xp09 Group1 26
Input wn79 Group2 24
Input wi40 Group1 19
Input vg03 Group1 33
Input va82 Group2 24
Input ui42 Group2 23
Input ud16 Group1 26
Input tp38 Group2 22
Input to98 Group2 22
Input th01 Group1 23
Input tg08 Group2 23
Input so80 Group2 21
Input re37 Group1 27
Input pt12 Group2 27
Input pl96 Group2 22
Input pi04 Group2 27
Input oo75 Group1 22
Input ob56 Group2 23
Input nh85 Group2 27
Input mw53 Group2 23
Input lu75 Group1 22
Input lt62 Group2 22
Input le00 Group1 23
Input lc79 Group2 24
Input kp89 Group1 22
Input ko71 Group2 25
Input ke93 Group1 29
Input ju55 Group1 20
Input jc49 Group1 21
Input in19 Group2 29
Input if27 Group1 29
Input hc55 Group2 23
Input gs02 Group1 43
Input fp50 Group2 21
Input ez57 Group2 25
Input et53 Group2 24
Input ei77 Group2 27
Input dn20 Group2 28
Input cp97 Group1 25
Input cn18 Group2 52
Input cm66 Group1 21
Input cg21 Group2 22
Input bw90 Group1 29
Input bg38 Group2 25
Input ab35 Group1 22
Best,
Larissa