From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Akansha Mahesh Naraindas
Sent: Tuesday, May 30, 2023 10:14 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Smoothing with surf2surf

On 30 May 2023, at 14:13, Huang, Yujing <YHUANG43@MGH.HARVARD.EDU> wrote:

 

        External Email - Use Caution        

 

I’m wondering the Freesurfer version you are using.

 

Best,

 

Yujing

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Akansha Mahesh Naraindas
Sent: Tuesday, May 30, 2023 8:22 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Smoothing with surf2surf

 

        External Email - Use Caution        

Hi

I have been attempting to perform just the smoothing step on a series of subjects using surf2surf and I seem to be getting an error when attempting to this. 

 

My command is as follows 

 

mri_surf2surf --hemi lh \

 --s fsaverage \

 --sval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \

 --fwhm 10 \

 --cortex \

 --tval combatlh.thickness.fwhm10.fsaverage.mgh

I get this error 

ERROR: Option  --sval unknown

 

Based on other posts on the mailing list I tried specifying the src and trg subjects but still receive the following error: 

mri_surf2surf --hemi lh \ --srcsubject fsaverage \

--srcsurfval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \

--trgsurfval combatlh.thickness.fwhm10.fsaverage.mgh

ERROR: Option  --srcsubject unknown

I was wondering if you might be able to help resolve this issue

Thank you very much!

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed.  If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.massgeneralbrigham.org/complianceline <MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted).  If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately.  Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.