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Dear MA
Please download the latest dev version and the command will be there
Cheers
Eugenio

Sent from my phone, please excuse brevity and typos

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Miguel Ángel Rivas Fernández <miguelrivasfdez@gmail.com>
Sent: Tuesday, September 11, 2018 12:20:55 PM
To: Freesurfer support list
Subject: [Freesurfer] Amygdala subfields segmentation
 

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Hi Freesurfer developes,

I am trying to execute the hippocampal and amygdala segmentation command " segmentHA_T2.sh bert FILE_ADDITIONAL_SCAN ANALYSIS_ID USE_T1 [SUBJECTS_DIR]" but freesurfer gave to me this error command not found.


However, when I use the command that segment only the hippocampal subfields (recon-all -s <subject_name> -hippocampal-subfields-T2 <file name of additional scan> <analysisID>) I don´t have any problem.


What would be the reason?


Thanks in advance.


Best,

--
Miguel Ángel Rivas Fernández