Hi all, 
I am currently trying to run hippocampal subfields in a couple of my participants using FreeSurfer6.0 (located at *nmr*:/usr/local/freesurfer/stable6).

It did run successfully for many of my subjects earlier in the year but some of them only had a let hemisphere segmentation. So I decided to re-run them using launchpad and also my local nmr computer.

Now, none of the hippocampal sufields segmentations appear (no rh/lh.hippoSfLabels-T1-T2.*.mgz appears). I looked at <FSSUBJECT>/scripts/scripts/hippocampal-subfields-T1T2.log and the error I get is:

Error:Cannot find CTF archive /autofs/cluster/freesurfer/centos6_x86_64/stable6/bin/segmentSubjectT1T2_autoEstimateAlveusML.ctf


Could a missing *.ctf  cause the error? (btw, the re-run happened after the major hardware crash). 

Thanks in advance for your help,
Rodrigo

PS: I am attaching the *log files as suggested in the bug reporting page. 


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Rodrigo Dennis Perea
Research Fellow
Department of Radiology
Athinoula A. Martinos Center
Massachusetts General Hospital