# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /home/marcos/freesurfer/ASegStatsLUT.txt --subject gus # sysname Linux # hostname freesurfer # machine x86_64 # user marcos # anatomy_type volume # # SUBJECTS_DIR /home/marcos/freesurfer/subjects # subjectname gus # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1139453.000000, mm^3 # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1122310.000000, mm^3 # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1123071.316664, mm^3 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 262768.814347, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 266640.410169, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 529409.224516, mm^3 # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 211530.623754, mm^3 # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 214452.468393, mm^3 # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 425983.092148, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 63239.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 669867.224516, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1033963.316664, mm^3 # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1020057.316664, mm^3 # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1017844.000000, mm^3 # Measure Mask, MaskVol, Mask Volume, 1501537.000000, mm^3 # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.757655, unitless # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 0.998415, unitless # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 17, unitless # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 17, unitless # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 34, unitless # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1503920.190724, mm^3 # SegVolFile mri/aseg.mgz # SegVolFileTimeStamp 2013/04/15 05:59:23 # ColorTable /home/marcos/freesurfer/ASegStatsLUT.txt # ColorTableTimeStamp 2013/02/26 03:23:16 # InVolFile mri/norm.mgz # InVolFileTimeStamp 2013/04/15 00:44:47 # InVolFrame 0 # PVVolFile mri/norm.mgz # PVVolFileTimeStamp 2013/04/15 00:44:47 # Excluding Cortical Gray and White Matter # ExcludeSegId 0 2 3 41 42 # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader normMean # TableCol 6 FieldName Intensity normMean # TableCol 6 Units MR # TableCol 7 ColHeader normStdDev # TableCol 7 FieldName Itensity normStdDev # TableCol 7 Units MR # TableCol 8 ColHeader normMin # TableCol 8 FieldName Intensity normMin # TableCol 8 Units MR # TableCol 9 ColHeader normMax # TableCol 9 FieldName Intensity normMax # TableCol 9 Units MR # TableCol 10 ColHeader normRange # TableCol 10 FieldName Intensity normRange # TableCol 10 Units MR # NRows 45 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 4 5448 5447.5 Left-Lateral-Ventricle 18.9846 14.4763 0.0000 91.0000 91.0000 2 5 325 325.3 Left-Inf-Lat-Vent 36.5238 14.1953 8.0000 78.0000 70.0000 3 7 13394 13393.9 Left-Cerebellum-White-Matter 89.2992 6.4312 43.0000 113.0000 70.0000 4 8 38676 38675.9 Left-Cerebellum-Cortex 59.7496 10.9394 2.0000 103.0000 101.0000 5 10 7325 7325.1 Left-Thalamus-Proper 93.3182 10.9183 50.0000 126.0000 76.0000 6 11 4325 4325.1 Left-Caudate 75.3036 9.8048 39.0000 111.0000 72.0000 7 12 7146 7145.8 Left-Putamen 82.2578 9.0653 29.0000 115.0000 86.0000 8 13 1893 1893.5 Left-Pallidum 101.0777 6.3742 41.0000 124.0000 83.0000 9 14 880 880.1 3rd-Ventricle 25.4454 15.5916 0.0000 78.0000 78.0000 10 15 1690 1690.1 4th-Ventricle 15.7566 11.8182 0.0000 62.0000 62.0000 11 16 23272 23272.0 Brain-Stem 86.4998 9.8839 9.0000 117.0000 108.0000 12 17 4004 4003.9 Left-Hippocampus 59.5301 10.6162 17.0000 105.0000 88.0000 13 18 1537 1537.4 Left-Amygdala 63.6881 8.7797 36.0000 93.0000 57.0000 14 24 896 895.9 CSF 30.3773 18.6046 0.0000 79.0000 79.0000 15 26 1004 1004.2 Left-Accumbens-area 67.5240 7.9015 46.0000 98.0000 52.0000 16 28 3823 3822.9 Left-VentralDC 94.2523 11.5743 38.0000 126.0000 88.0000 17 30 67 66.9 Left-vessel 57.4714 15.3535 23.0000 85.0000 62.0000 18 31 1241 1240.8 Left-choroid-plexus 52.2579 17.7575 11.0000 109.0000 98.0000 19 43 5273 5273.4 Right-Lateral-Ventricle 16.7235 13.6157 0.0000 80.0000 80.0000 20 44 442 441.8 Right-Inf-Lat-Vent 31.4792 12.7152 4.0000 68.0000 64.0000 21 46 14905 14905.1 Right-Cerebellum-White-Matter 87.4101 7.0451 40.0000 110.0000 70.0000 22 47 39518 39518.5 Right-Cerebellum-Cortex 58.2734 10.4899 6.0000 102.0000 96.0000 23 49 6986 6986.1 Right-Thalamus-Proper 87.8301 11.4949 12.0000 120.0000 108.0000 24 50 4640 4639.5 Right-Caudate 71.4004 10.8028 17.0000 113.0000 96.0000 25 51 6794 6794.2 Right-Putamen 82.2936 9.0369 51.0000 105.0000 54.0000 26 52 1684 1684.5 Right-Pallidum 100.8713 5.2634 74.0000 119.0000 45.0000 27 53 4114 4114.2 Right-Hippocampus 59.6232 10.4412 13.0000 105.0000 92.0000 28 54 1666 1665.5 Right-Amygdala 60.7291 8.7046 26.0000 88.0000 62.0000 29 58 908 907.6 Right-Accumbens-area 67.1674 8.6379 45.0000 101.0000 56.0000 30 60 3815 3815.2 Right-VentralDC 93.1715 12.4722 14.0000 125.0000 111.0000 31 62 279 278.9 Right-vessel 60.0561 14.5548 10.0000 91.0000 81.0000 32 63 1439 1439.1 Right-choroid-plexus 51.7400 16.6634 13.0000 111.0000 98.0000 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000 34 77 1393 1393.3 WM-hypointensities 73.6393 14.8007 14.0000 116.0000 102.0000 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 37 80 31 31.0 non-WM-hypointensities 59.8205 15.6942 29.0000 104.0000 75.0000 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 40 85 347 347.2 Optic-Chiasm 78.9357 24.6777 15.0000 127.0000 112.0000 41 251 803 803.3 CC_Posterior 112.7112 9.3588 73.0000 132.0000 59.0000 42 252 358 358.3 CC_Mid_Posterior 106.5000 11.4172 45.0000 123.0000 78.0000 43 253 360 359.9 CC_Central 107.2299 8.5846 71.0000 124.0000 53.0000 44 254 457 456.8 CC_Mid_Anterior 108.4947 7.6458 80.0000 129.0000 49.0000 45 255 899 898.7 CC_Anterior 109.6963 10.0695 67.0000 131.0000 64.0000