Try running "recon-all -surfvolume ..."
doug
> _______________________________________________
On 09/20/2012 02:03 PM, Darren Gitelman wrote:
> Dear List
>
> I am adding to the post on this error from yesterday regarding
> problems with running qcache.
>
> I know this has been posted to the list before, but the suggested
> fixes and checks don't fix the problem.
>
> See the error below (ERROR: number of vertices in
> /projects/d20277/dek/done/analyzed/3300/surf/lh.volume does not match
> surface (145332,147148) ERROR: reading curvature file)
>
> 1) Running recon-all -s <subjid> -vno-check does not find any
> problems. It says everything is verified and checks out ok.
>
> 2) Running recon-all -s <subjid> -make all returns the message: make:
> Nothing to be done for `all'.
>
> But when I try recon-all -s <subjid> -qcache I get the error on this
> and several other subjects, but not all subjects.
>
> Checking the modification times on some files it looks like the
> thickness file came after the curv file.
>
> [drg@quser03 surf]$ ll *.thickness
> -rwxrwxrwx 1 dek322 d20277 588607 Sep 11 21:54 lh.thickness
> -rwxrwxrwx 1 dek322 d20277 593959 Sep 11 22:10 rh.thickness
> [drg@quser03 surf]$ ll *.curv
> -rwxrwxrwx 1 dek322 d20277 588607 Sep 11 21:45 lh.curv
> -rwxrwxrwx 1 dek322 d20277 593959 Sep 11 22:01 rh.curv
>
> Any suggestions for fixing the qcache error would be appreciated.
>
> Darren
> --
>
> ---------------------------------------------------
>
> #@# 1/1 3300 Wed Sep 19 13:52:44 CDT 2012 --------------
>
> -----------------------
>
> mri_surf2surf --srcsubject 3300 --srchemi lh --srcsurfreg sphere.reg
> --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval
> ./tmp.mris_preproc.6938/3300.1.mgh --sval
> /projects/d20277/dek/done/analyzed/3300/surf/lh.volume --sfmt curv
> --noreshape --no-cortex
>
> Source registration surface changed to sphere.reg
>
> Target registration surface changed to sphere.reg
>
> srcsubject = 3300
>
> srcval = /projects/d20277/dek/done/analyzed/3300/surf/lh.volume
>
> srctype = curv
>
> trgsubject = fsaverage
>
> trgval = ./tmp.mris_preproc.6938/3300.1.mgh
>
> trgtype =
>
> srcsurfreg = sphere.reg
>
> trgsurfreg = sphere.reg
>
> srchemi = lh
>
> trghemi = lh
>
> frame = 0
>
> fwhm-in = 0
>
> fwhm-out = 0
>
> label-src = (null)
>
> label-trg = (null)
>
> OKToRevFaceOrder = 1
>
> Reading source surface reg
> /projects/d20277/dek/done/analyzed/3300/surf/lh.sphere.reg
>
> Loading source data
>
> Reading curvature file
> /projects/d20277/dek/done/analyzed/3300/surf/lh.volume
>
> ERROR: number of vertices in
> /projects/d20277/dek/done/analyzed/3300/surf/lh.volume does not match
> surface (145332,147148)
>
> ERROR: reading curvature file
>
> Linux quser01 2.6.18-128.el5 #1 SMP Wed Dec 17 11:41:38 EST 2008
> x86_64 x86_64 x86_64 GNU/Linux
>
> recon-all -s 3300 exited with ERRORS at Wed Sep 19 13:52:46 CDT 2012
>
>
>
>
> --
> Darren Gitelman, MD
> Northwestern University
> 710 N. Lake Shore Dr.
> Abbott 11th Floor
> Chicago, IL 60611
> Ph: (312) 908-8614
> Fax: (312) 908-5073
>
>
>
>
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
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