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Dear Doug,


Please find the enclosed the output of mris_preproc and .log output of terminal. I viewed the output in freevew as overlay, and again it seems that values getting 0 after mris_preproc.



Thanks,

Reza

From: Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu>
Sent: Wednesday, August 7, 2019 6:03:58 PM
To: Reza Rahmanzadeh
Cc: Freesurfer support list
Subject: Re: [Freesurfer] [WARNING: UNSCANNABLE EXTRACTION FAILED]Re: need for help
 
Run mris_preproc with a single subject and send the terminal output

On 8/7/19 11:47 AM, Reza Rahmanzadeh wrote:
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>
> Yes, i checked -projfrac 0.5 with old or new mris_preproc but didn’t work. I checked all registration, they are perfect.
>
>> On 7 Aug 2019, at 17:29, Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu> wrote:
>>
>> If you do not specify --projfrac-avg, does it come out as non-zero? If
>> so, I would think that it is a problem with the registration. Have you
>> checked the registrations?
>>
>>> On 8/7/19 11:25 AM, Reza Rahmanzadeh wrote:
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>>>
>>> It means that for any given subjects i’ve had one -iv argument and then for mri_glmfit i used .fsgd file with the same order.
>>>
>>>> On 7 Aug 2019, at 17:23, Reza Rahmanzadeh <reza.rahmanzadeh@unibas.ch> wrote:
>>>>
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>>>> Yes, for mris_preproc:
>>>>
>>>> mris_preproc --target fsaverage --hemi lh --projfrac-avg 0 1 0.25 --out lh.NDI_inflated.avg.mgh --iv <my ndi map_for controls and patients> <registration.lta for that subjects>
>>>>
>>>>> On 7 Aug 2019, at 17:14, Reza Rahmanzadeh <reza.rahmanzadeh@unibas.ch> wrote:
>>>>>
>>>>> mris_preproc --target fsaverage --hemi lh --projfrac-avg 0 1 0.25 --out lh.NDI_inflated.avg.mgh
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