root@828abe00572a:/flywheel/v0# surfreg --s test --t fsaverage_sym --lh --no-annot --xhemi Tue Dec 3 16:21:45 UTC 2024 setenv SUBJECTS_DIR /usr/local/freesurfer/subjects cd /flywheel/v0 /usr/local/freesurfer/bin/surfreg --s test --t fsaverage_sym --lh --no-annot --xhemi Linux 828abe00572a 6.5.0-1024-gcp #26~22.04.1-Ubuntu SMP Fri Jun 14 18:48:45 UTC 2024 x86_64 GNU/Linux #@# lh Tue Dec 3 16:21:45 UTC 2024 #CMD# mris_register -curv -threads 1 /usr/local/freesurfer/subjects/test/xhemi/surf/lh.sphere /usr/local/freesurfer/subjects/fsaverage_sym/lh.reg.template.tif /usr/local/freesurfer/subjects/test/xhemi/surf/lh.fsaverage_sym.sphere.reg using smoothwm curvature for final alignment cwd /flywheel/v0 cmdline mris_register -curv -threads 1 /usr/local/freesurfer/subjects/test/xhemi/surf/lh.sphere /usr/local/freesurfer/subjects/fsaverage_sym/lh.reg.template.tif /usr/local/freesurfer/subjects/test/xhemi/surf/lh.fsaverage_sym.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 7.4.1 7.4.1 reading surface from /usr/local/freesurfer/subjects/test/xhemi/surf/lh.sphere... reading template parameterization from /usr/local/freesurfer/subjects/fsaverage_sym/lh.reg.template.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=828ab, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=828ab, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc tol=1.0e+00, sigma=0.5, host=828ab, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = 0.000, std = 5.555 curvature mean = 0.040, std = 0.799 curvature mean = 0.011, std = 0.866 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (10.00, -3.00, -6.50) sse = 255888.2, elapsed since starting=0.4827 min MRISrigidBodyAlignGlobal() done 0.48 min curvature mean = 0.019, std = 0.805 curvature mean = 0.005, std = 0.948 curvature mean = 0.018, std = 0.817 curvature mean = 0.003, std = 0.979 curvature mean = 0.018, std = 0.820 curvature mean = 0.001, std = 0.992 2 Reading smoothwm curvature mean = -0.018, std = 0.269 curvature mean = 0.033, std = 0.166 curvature mean = 0.055, std = 0.380 curvature mean = 0.030, std = 0.177 curvature mean = 0.030, std = 0.581 curvature mean = 0.030, std = 0.188 curvature mean = 0.015, std = 0.726 curvature mean = 0.030, std = 0.194 curvature mean = 0.005, std = 0.830 MRISregister() return, current seed 0 -01: dt=0.0000, 11 negative triangles VmPeak 507676 111: dt=0.9900, 11 negative triangles 112: dt=0.9900, 10 negative triangles 113: dt=0.9900, 9 negative triangles 114: dt=0.9900, 11 negative triangles 115: dt=0.9900, 9 negative triangles 116: dt=0.9900, 9 negative triangles 117: dt=0.9900, 9 negative triangles 118: dt=0.9900, 11 negative triangles 119: dt=0.9900, 8 negative triangles 120: dt=0.9900, 10 negative triangles 121: dt=0.9900, 9 negative triangles 122: dt=0.9900, 9 negative triangles 123: dt=0.9900, 10 negative triangles 124: dt=0.9900, 10 negative triangles 125: dt=0.9900, 9 negative triangles 126: dt=0.9900, 10 negative triangles 127: dt=0.9900, 6 negative triangles 128: dt=0.9900, 10 negative triangles 129: dt=0.9900, 5 negative triangles 130: dt=0.9900, 1 negative triangles 131: dt=0.9900, 5 negative triangles 132: dt=0.9900, 3 negative triangles 133: dt=0.9900, 1 negative triangles writing registered surface to /usr/local/freesurfer/subjects/test/xhemi/surf/lh.fsaverage_sym.sphere.reg... registration took 0.16 hours #VMPC# mris_register VmPeak 507676 FSRUNTIME@ mris_register 0.1581 hours 1 threads #CMD# mris_convert --center --vol-geom /usr/local/freesurfer/subjets/fsaverage/mri/orig.mgz /usr/local/freesurfer/subjects/test/xhemi/surf/lh.fsaverage_sym.sphere.reg /usr/local/freesurfer/subjects/test/xhemi/surf/lh.fsaverage_sym.sphere.reg centering surface error: mghRead(/usr/local/freesurfer/subjets/fsaverage/mri/orig.mgz, -1): could not open file