Dear all,

I have been running version 4 of the HCP Pipelines which now used FreeSurfer 6.0. I get the following error when running recon-all using their FreeSurferPipelineBatch script:

nu_evaluate: crashed while running minc_modify_header (termination status=134)

nu_correct: crashed while running nu_evaluate (termination status=65280)

ERROR: nu_correct

I didn't get this error previously when running FreeSurfer 5.3.0 on the same set of data. Are the MNI tools distributed through FreeSurfer 6.0 sensitive to the operating system and its version? Does anyone have a record of it working on an Ubuntu 14.04 OS?

1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0

2) Platform: Ubuntu 14.04

3) recon-all.log: see attached

Kind regards,

Dinal Jayasekera

PhD Candidate | InSITE Fellow

Ammar Hawasli Lab

Department of Biomedical Engineering | Washington University in St. Louis