mri_label_volume -eTIV \
$sdir/transforms/talairach.xfm 1948 \
$sdir/aseg.mgz 17 53
where $sdir is the path to the subject's mri directory (ie, $SUBJECTS_DIR/<subjid>/mri). The '17' and '53' are label ID's, in this case left and right hippocampus (see the subjects /stats/aseg.stats file for IDs). The output will look like:
using eTIV from atlas transform of 1528 cm^3From a previous post at FS mailing list, I also read something similar,
processing label 17...
3822 voxels (3822.0 mm^3) in label 17, %0.250119 of eTIV volume (1528075)
processing label 53...
4410 voxels (4410.0 mm^3) in label 53, %0.288598 of eTIV volume (1528075)
Just as an aside, once you have a talairach_with_skull.lta file (whether
from v3 or v4), you can calculate eTIV as scale_factor/determinant(lta),
where the scale_factor employed is 2150.