Thanks Dr.Bruce, one small clarification then, it is mentioned in the user manual to verify this registration result before proceeding further so when i used tkregister2 --sub2 --fstal-avi i could see two images one is the original and the other one talairach atlas and they looked they are aligned almost closely. So what is this image i looked at?

Thanks

venkateswaran 


-----Original Message-----
From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu]
Sent: Thu 11/19/2009 12:43 PM
To: Rajagopalan, Venkateswaran
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] talairach registration-result

Hi Venkateswaran,

we don't apply the tal xform,just compute it (in
mri/transforms/talairach.xfm), so there is no volume "after talairach".

cheers,
Bruce

On Thu, 19 Nov 2009, Rajagopalan, Venkateswaran wrote:

> Dear Freesurfer Users,
>
> Could anyone please tell me what is the name of the image file after talairach registration for instance like nu.mgz (after intensity correction).
>
> Thanks
>
> venkateswaran
>
>
>
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P Please consider the environment before printing this e-mail

Cleveland Clinic is ranked one of the top hospitals
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Visit us online at http://www.clevelandclinic.org for
a complete listing of our services, staff and
locations.


Confidentiality Note:  This message is intended for use
only by the individual or entity to which it is addressed
and may contain information that is privileged,
confidential, and exempt from disclosure under applicable
law.  If the reader of this message is not the intended
recipient or the employee or agent responsible for
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hereby notified that any dissemination, distribution or
copying of this communication is strictly prohibited.  If
you have received this communication in error,  please
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