Would it be possible to send me the gii file?



From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Erika Nolan <erika.nolan@mail.mcgill.ca>
Sent: Tuesday, May 18, 2021 2:56:53 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Freeview Update using MAC
 

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Hi Ruopeng, 

Thank you for the quick reply. 

When I attempt to untar Freeview: 

erikanolan$ tar -xzvf /Users/erikanolan/Downloads/freesurfer-darwin-macOS-HighSierra-dev-freeview.tar.gz

tar: Error opening archive: Failed to open '/Users/erikanolan/Downloads/freesurfer-darwin-macOS-HighSierra-dev-freeview.tar.gz'


When I attempt to open a HCP .gii file on Freeview (also see attached screenshot): 

** invalid: gim version = 1

mrisReadGIFTIfile: GIFTI file /Users/erikanolan/Desktop/SULCAL PAINTING 7.1.1/103515/103515.L.pial.native.surf.gii is invalid!

MRISread failed

mrisReadGIFTIfile: GIFTI file /Users/erikanolan/Desktop/SULCAL PAINTING 7.1.1/103515/103515.L.pial.native.surf.gii is invalid!


Thank you, 

Erika

_____________________________

Erika Nolan 

Ph.D. Candidate

Clinical Psychology, Department of Psychology


Montreal Neurological Institute
McGill University
Montreal, Canada
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Wang, Ruopeng <RWANG4@mgh.harvard.edu>
Sent: May 18, 2021 2:50 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Freeview Update using MAC
 
Hi Erika,

What error message do you get when you launch Freeview on your macOS 10.12?

Ruopeng

On May 18, 2021, at 1:57 PM, Erika Nolan <erika.nolan@mail.mcgill.ca> wrote:

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Good afternoon, 

I downloaded Freesurfer 7.1.1 and am trying to open HCP .gii files in Freeview. I tried updating Freeview (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview) using the instructions for MacOS but it fails:

Mac

  1. Go into your $FREESURFER_HOME and create a backup of your existing freeview app (this may require sudo access): 
    cd $FREESURFER_HOME
cp Freeview.app Freeview-backup.app
  2. Download the dev, standalone freeview tarball from here
  3. Untar freeview within your $FREESURFER_HOME (this may require sudo): 
    cd $FREESURFER_HOME
tar -xzvf /path/to/freesurfer-darwin-macOS_HighSierra-dev-freeview.tar.gz
  4. IMPORTANT: If you are replacing freeview in a freesurfer release LESS than 7.0, then you must also remove the line "source $FREESURFER_HOME/sources.csh" from the $FREESURFER_HOME/bin/freeview script


The tar file that downloads is " freesurfer-darwin-macOS-dev-freeview.tar" is this file correct? My Mac is a MacOS Sierra (not HighSierra), version 10.12.6. Is it possible for me to get a file that is compatible with my Mac?

Thank you for your help!!! 

Erika 
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