External Email - Use Caution        

Hi Miguel Angel,

This bug was recently fixed in the dev version. If you download the most recent one, you won’t have this problem.

Cheers,

/Eugenio

 

-- 

Juan Eugenio Iglesias

ERC Senior Research Fellow

Centre for Medical Image Computing (CMIC)

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

 

 

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Miguel Ángel Rivas Fernández <miguelrivasfdez@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, 13 September 2018 at 21:12
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Hippocampal-Amygdala subfields error

 

        External Email - Use Caution        

 

Hello Freesurfer devs,

 

I ran the hippocampal and amygdala subfields command in my sample and I get the following error in several subjects:

 

Constructing image-to-world transform from header information (asmr1.mgz)
Constructing image-to-world transform from header information (/Applications/freesurfer/subjects/5232/tmp/hippoSF_T2_v21_HIPO-AMI_left/imageDump.mgz)
Wrote image to file asmr2.mgz
This file does not contain MRI parameters
This file does not contain MRI parameters
In an assignment  A(:) = B, the number of elements in A and B must be the same.

Error in segmentSubjectT2_autoEstimateAlveusML (line 2147)Constructing image-to-world transform from header information (asmr1.mgz)
Constructing image-to-world transform from header information (/Applications/freesurfer/subjects/5232/tmp/hippoSF_T2_v21_HIPO-AMI_left/imageDump.mgz)
Wrote image to file asmr2.mgz
This file does not contain MRI parameters
This file does not contain MRI parameters
In an assignment  A(:) = B, the number of elements in A and B must be the same.

Error in segmentSubjectT2_autoEstimateAlveusML (line 2147)

 

MATLAB:subsassignnumelmismatch
Darwin rmnlab1.inv.usc.es 17.4.0 Darwin Kernel Version 17.4.0: Sun Dec 17 09:19:54 PST 2017; root:xnu-4570.41.2~1/RELEASE_X86_64 x86_64

T2 hippocampal subfields exited with ERRORS at jueves, 13 de septiembre de 2018, 21:37:33 CEST

 

 

 

What would be the reason?

 

 

Thanks in advance,

 

 

Best wishes,


--

Miguel Ángel Rivas Fernández