Hello FreeSurfer Developers,

I'm want to run HCP T1W data of recon-all , but it always failed on step " WhitePreAparc lh", below is my run information:

OS: Ubuntu 22.04.2 LTS

MEM: 32G

CPU: 16

Freesurfer Version: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460

Command:

export SUBJECTS_DIR=$(pwd)
nohup recon-all -s $1 -i $(ls *${1}*) -all -qcache -3T -parallel -openmp 16 -threads 200 > nohup_${1}.log 2> nohup_${1}.log &

Error messages as below:

mris_autodet_gwstats done
@#@FSTIME  2024:02:06:05:28:14 mris_autodet_gwstats N 8 e 5.75 S 1.02 U 8.70 P 169% M 277604 F 3 R 131626 W 0 c 403 w 6466 I 0 O 8 L 1.96 14.01 13.54
@#@FSLOADPOST 2024:02:06:05:28:20 mris_autodet_gwstats N 8 1.96 13.81 13.47
#--------------------------------------------
#@# WhitePreAparc lh 2024年 02月 06日 星期二 05:28:20 CST
cd /home/tben/ds000102/HCA6139970_V1_MR/mri
mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 200 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5
7.4.1
7.4.1

cd /home/tben/ds000102/HCA6139970_V1_MR/mri
setenv SUBJECTS_DIR /home/tben/ds000102
mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 200 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5

Command terminated by signal 11
@#@FSTIME  2024:02:06:05:28:20 mris_place_surface N 18 e 24.22 S 4.47 U 1.71 P 25% M 185596 F 9 R 46047 W 0 c 184 w 12734 I 1296 O 0 L 1.96 13.81 13.47
@#@FSLOADPOST 2024:02:06:05:28:44 mris_place_surface N 18 69.96 28.86 18.46
Linux tben-dev-server 6.5.0-15-generic #15~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 12 18:54:30 UTC 2 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s HCA6139970_V1_MR exited with ERRORS at 2024年 02月 06日 星期二 05:28:45 CST

For more details, see the log file /home/tben/ds000102/HCA6139970_V1_MR/scripts/recon-all.log
To report a problem, see MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

Check the core dump file under /var/crash

vim _opt_freesurfer_bin_mris_place_surface.1000.crash

ProcStatus:
 Name:  mris_place_surf
 Umask: 0002
 State: S (sleeping)
 Tgid:  23410
 Ngid:  0
 Pid:   23410
 PPid:  22657
 TracerPid:     0
 Uid:   1000    1000    1000    1000
 Gid:   1000    1000    1000    1000
 FDSize:        64
 Groups:        4 24 27 30 46 122 134 135 1000
 NStgid:        23410
 NSpid: 23410
 NSpgid:        23410
 NSsid: 22657
 Kthread:       0
 VmPeak:        10878292 kB
 VmSize:        10394436 kB
 VmLck:        0 kB
 VmPin:        0 kB
 VmHWM:   185500 kB
 VmRSS:   185500 kB
 RssAnon:         179356 kB
 RssFile:           6144 kB
 RssShmem:             0 kB
 VmData:         2068316 kB
 VmStk:      132 kB
 VmExe:     3084 kB
 VmLib:     3820 kB
 VmPTE:     1772 kB
 VmSwap:               0 kB
 HugetlbPages:         0 kB
 CoreDumping:   1
 THP_enabled:   1
 untag_mask:    0xffffffffffffffff
 Threads:       200 SigQ:  0/128234
 SigPnd:        0000000000000000
 ShdPnd:        0000000000000000
 SigBlk:        0000000000000000
 SigIgn:        0000000000000000
 SigCgt:        0000000100000000
 CapInh:        0000000000000000
 CapPrm:        0000000000000000
 CapEff:        0000000000000000
 CapBnd:        000001ffffffffff
 CapAmb:        0000000000000000
 NoNewPrivs:    0
 Seccomp:       0
 Seccomp_filters:       0
 Speculation_Store_Bypass:      thread vulnerable
 SpeculationIndirectBranch:     conditional enabled
 Cpus_allowed:  ffff
 Cpus_allowed_list:     0-15
 Mems_allowed:  00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000003
 Mems_allowed_list:     0-1
 voluntary_ctxt_switches:       21
 nonvoluntary_ctxt_switches:    17
Signal: 11
Uname: Linux 6.5.0-15-generic x86_64
UserGroups: adm cdrom dip lpadmin lxd plugdev sambashare sudo
CoreDump: base64

I use 3 different VMs to run the same sample with different freesurfer versions , 2 are 7.4.1 and another one is 7.2 , but always failed on this step , I don't know what's the reason cause this failed , can you please help to have a look ? Thanks a lot .