You can enter mean-centered (demeaned) values into the fsgd, but be
aware that this is something that you usually do not want to do (though
maybe ok for an interaction term?). Below is something I posted a few
weeks ago on this subject.
doug
The important idea here is the difference between computing/testing
the mean response and computing the intercept. The intercept is only
meaningful when a continuous variable is present. When you do a
statistical test, the results will be different for two possible
reasons:
1. The statistical efficiencies are different (due to correlations
caused by the non-zero mean of the continuous variable), which will
reduce significance. This is always the case.
2. The values being tested (ie, the mean vs the intercept) are
possibly different. I say "possibly" here because, scientifically
speaking, there may be no effect of your continuous variable, in
which case it would not add to the overall mean.
In my opinion, the most appropriate way to analyze the data is to
leave the means in your continuous variables (ie, do not
demean). Here's why. When you believe that a variable is important
scientifically, you posit a model with a population effect
(parameterized by an intercept) and the continuous variable
(parameterized by a slope). BOTH OF THESE PARAMETERS ARE INDEPENDENT
OF THE SAMPLE YOU HAVE CHOSEN. Therefore, when you perform statistical
tests on these parameters, your results are independent of your sample
-- very important when doing science! In contrast, the mean of your
sample may be dependent on the sample you have chosen, and so
statistical tests may only then apply to your sample.
For example, if age adds to the hemodynamic response (HRF), older
subjects will have a larger amplitude to their HRF. Let's say you
perform an experiment on a group of subjects and find that their mean
HRF is significantly different than 0. Someone else tries to replicate
your experiment and can't. Upon further examination, your sample was
somewhat older than the other which caused your sample to have a
higher mean and so achieve significance. When both sets are reanalyzed
using age as a nuisance variable, the results are the same.
This does not necessarily mean you should not demean your variables,
but you just have to be careful what conclusions you draw from
it. Note: this applies to variables and regressors -- don't demean
your observed raw data (unless you know what you are doing).
Jerry Yeou-Wei Chen wrote:
Hello,
Are regressors mean centered for mri_glmfit?
Judging by one of my previous Xg.dat files, it does not appear so.
If not, I plan to manually enter my design matrix, with mean centered
regressors.
Do I need to enter the corresponding values in the FSGD file as mean
centered? or can they remain non- mean centered?
Thanks,
- Jerry
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