External Email - Use Caution
Can you attach your recon-all.log from both FS 6.0.0 and FS 7.4.1?
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu>
On Behalf Of Ruifeng Dong
Sent: Wednesday, July 12, 2023 11:19 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Issue with FS7.4.1
External Email - Use Caution
Hi Freesurfers,
I am running the new Freesurfer 7.4.1 on Ubuntu 22.04, but ran into the following error. I tested the same data using FS 6.0.0 and it worked fine. The command I am using is recon-all -3T -all. Thanks.
mri_label2vol --defects /qmi08_raid/ruifeng/work_with_project_data_T1/clinical_3dresampled-2-RAI/alltogether/uncompressed/testSub_10_0_h/00_test_dicom/cont_10_0_PRISMA_dicom/rerun_FS741/mriconvert2nii_ASR2PSR_reorientimage3d/surf/lh.orig.nofix
/qmi08_raid/ruifeng/work_with_project_data_T1/clinical_3dresampled-2-RAI/alltogether/uncompressed/testSub_10_0_h/00_test_dicom/cont_10_0_PRISMA_dicom/rerun_FS741/mriconvert2nii_ASR2PSR_reorientimage3d/surf/lh.defect_labels /qmi08_raid/ruifeng/work_with_project_data_T1/clinical_3dresampled-2-RAI/alltogether/uncompressed/testSub_10_0_h/00_test_dicom/cont_10_0_PRISMA_dicom/rerun_FS741/mriconvert2nii_ASR2PSR_reorientimage3d/mri/orig.mgz
1000 0 /qmi08_raid/ruifeng/work_with_project_data_T1/clinical_3dresampled-2-RAI/alltogether/uncompressed/testSub_10_0_h/00_test_dicom/cont_10_0_PRISMA_dicom/rerun_FS741/mriconvert2nii_ASR2PSR_reorientimage3d/mri/surface.defects.mgz /qmi08_raid/ruifeng/work_with_project_data_T1/clinical_3dresampled-2-RAI/alltogether/uncompressed/testSub_10_0_h/00_test_dicom/cont_10_0_PRISMA_dicom/rerun_FS741/mriconvert2nii_ASR2PSR_reorientimage3d/label/lh.nofix.cortex.label
*** buffer overflow detected ***: terminated
Abort (core dumped)
ERROR:
Command exited with non-zero status 1