Thanks a lot!


On Mon, Sep 23, 2013 at 3:05 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
Hi Amirhossein

as long as the surfaces are correct (yellow and red lines), then you don't need to worry about the segmentation, as it is the surfaces that define the thickness

cheers
Bruce

On Mon, 23 Sep 2013, amirhossein manzouri wrote:

Hi, 
In the attached Slice image of a processed brain, there is a yellow line
which defines the WM and red line for the cortex but in segmentation some WM
have been segmented as cortex and some part of cortex have not been
segmented ! Would you please let me know how to handle the situation while I
am reporting cortical thicknesses of my data?

--
Best regards,
Amirhossein Manzouri 

 





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--
Best regards,
Amirhossein Manzouri