Dear Robert,
Sorry for the slow response.
Yes, it should be fine.
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
http://www.jeiglesias.com
From:
freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Toms, Robert <Robert.Toms@utdallas.edu>
Date: Monday, May 5, 2025 at 1:00 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] SegmentSubfieldsT1Longitudinal Error, Line 2136 -- Are disorganized volumes usable?
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From: Toms, Robert
Sent: Monday, May 5, 2025 2:55 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: SegmentSubfieldsT1Longitudinal Error, Line 2136 -- Are disorganized volumes usable?
Dear Experts,
I'm having the same error as this 2023 post that y'all responded to:
I'm running FreeSurfer 8.0.0 on Ubuntu 22.04.5 LTS, and most of my subjects have run through the whole pipeline with no problems.
You told the original 2023 poster that the 2 timepoint volumes are disorganized, but still usable—which was very helpful, and covers most of my error cases, however two of my errored-out subjects have 3 timepoints.
I wanted to check with you in case 3-timepoint volumes wouldn't be usable for some reason?
The following volumes are in base/tmp/hippoSF_T1_long.v22_right/ :
volumesAmygdala_tp_1.txt
volumesAmygdala_tp_2.txt
volumesAmygdala_tp_3.txt
volumesHippo_tp_1.txt
volumesHippo_tp_2.txt
volumesHippo_tp_3.txt
I've attached the logs for both of them, and the final lines of both logs are identical:
Applying LTAtransformInterp (resample_type 0)
writing to discreteLabelsMergedBodyHeadNoMLorGCDGResampledT1_tp_2.mgz...
Transforming points
Transforming points
Wrote image to file image_tp_3.mgz
This file does not contain MRI parameters
Unable to perform assignment because the left and right sides have a different number of elements.
Error in SegmentSubfieldsT1Longitudinal (line 2136)
Thank you!
Robert