On 5 Sep 2016, at 15:10, Vaz pandolfo, Renata <rvp8@njit.edu> wrote:

Dear FS experts,

I have a question about the "segmentation with an additional scan - multispectral segmentation" 
on the hippocampal sf segmentation, FS dev. 6.0.

For controls on which I had already run recon-all -all, I added the T2 sequence with the following 
command:

recon-all -s <subject_name> \
-hippocampal-subfields-T1T2 <file name of additional scan> <analysisID>

Now, if I want to do the same thing with FLAIR as the additional input, which flag should I use?

Thank you,

Renata